Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20049
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  

>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 646 ITNIIGQDSFVKMITTIKINRWKFIVL 566
           I N +G+D  VK I  +K  +WK I+L
Sbjct: 390 IPNFVGRDDLVKKIVKLKEEKWKLILL 416


>SB_34796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 369 Q*NYGTKKLQ*DANRFNYQRSLLFSFYIKISLLRNYLLCLEIWH 500
           Q N   ++L+ D N   +QRS + +F +  SL    L C+++WH
Sbjct: 43  QHNSDPRRLK-DPNVQRFQRSSVDTFLVSSSLCLGDLCCIKLWH 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,461
Number of Sequences: 59808
Number of extensions: 215286
Number of successful extensions: 249
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)