Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20049
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    26   0.37 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.5  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 45  KMISS*KILISMFTNNNMLSNYQ*NYGT--KKLQ 140
           K+IS+   L + +  NN  +NY  NY T  KKLQ
Sbjct: 80  KIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQ 113


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  TNNNMLSNYQ*NYGTKKL 137
           +NN    NY  NY +KKL
Sbjct: 306 SNNYNYKNYNNNYNSKKL 323



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 342 TNNNMLSNYQ*NYGTKKL 395
           +NN    NY  NY +KKL
Sbjct: 306 SNNYNYKNYNNNYNSKKL 323


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 84  TNNNMLSNYQ*NYGTKKL 137
           +NN    NY  NY +KKL
Sbjct: 317 SNNYNYKNYNNNYNSKKL 334



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 342 TNNNMLSNYQ*NYGTKKL 395
           +NN    NY  NY +KKL
Sbjct: 317 SNNYNYKNYNNNYNSKKL 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,740
Number of Sequences: 438
Number of extensions: 3360
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)