Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20048
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0404 - 21833736-21834035,21834506-21834662,21834834-218350...    29   3.8  
11_03_0078 - 9662677-9663642,9666589-9666747                           28   6.6  
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850...    28   6.6  

>01_05_0404 -
           21833736-21834035,21834506-21834662,21834834-21835080,
           21835424-21835637,21836565-21836728,21836843-21836950,
           21841596-21841797,21843676-21844194
          Length = 636

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 483 VEIPTPKSNPQNYNCVITGGRTSCEST 403
           V + +P+ NP  YNC ++GGR    +T
Sbjct: 29  VAVASPEVNPLYYNCSLSGGRYGQNTT 55


>11_03_0078 - 9662677-9663642,9666589-9666747
          Length = 374

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 546 RDHASGAVLRGSLNPGYLSYEVE 478
           R+    A++R  LNPG+L Y+ E
Sbjct: 301 REECEEAMIRSGLNPGWLEYDTE 323


>02_02_0279 -
           8507603-8507620,8508040-8508060,8508613-8508835,
           8509204-8509553,8509631-8509729,8509811-8510105,
           8510200-8510405,8510498-8510689,8510766-8511163,
           8511258-8511444,8511473-8511528,8511800-8511872,
           8512012-8512872,8514353-8514778
          Length = 1134

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 546 RDHASGAVLRGSLNPGYLSYEVE 478
           R+    A++R  LNPG+L Y+ E
Sbjct: 390 REECEEAMIRSGLNPGWLEYDTE 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,641
Number of Sequences: 37544
Number of extensions: 452890
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)