Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20048
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          35   0.077
SB_6148| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)                29   5.1  
SB_20260| Best HMM Match : fn3 (HMM E-Value=0)                         28   6.7  
SB_14431| Best HMM Match : HTH_5 (HMM E-Value=7.8e-06)                 28   6.7  
SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      28   8.9  

>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 34.7 bits (76), Expect = 0.077
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 82  IRSRSQGYGHLPISVAGLSYAPVCQTDSPKNIVQL-FFCNCLDGWTSSQPTWLLSGYWNN 258
           +RS S G G L  ++A   +AP       KN+V + +     +G+   +    + GYW++
Sbjct: 315 LRSFSGGEGFLEEAIAHDFFAPAFVLSDDKNLVGMPWEMTLFNGYLLRKKNGYVYGYWSD 374

Query: 259 IHLQRECATDLEI 297
           IHL  E    L I
Sbjct: 375 IHLVPELQLALNI 387


>SB_6148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 468 PKSNPQNYNCVITGGRTSCESTRVGKQHYAYSCREAVMR 352
           P+ +  + +C++T  R +CE   VGK     S +  V R
Sbjct: 32  PRGSSSHDSCLVTNTRRTCEQALVGKAFKRLSGKSEVQR 70


>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
          Length = 598

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +1

Query: 85  RSRSQGYGHLPISVAGLSYAPVCQTDSPKNIVQLFFC 195
           R   Q YGH PI+V  LS + + +T S  NI+ L FC
Sbjct: 316 RKYIQRYGHRPIAVTSLSRS-IIKTMS-SNILLLIFC 350


>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1428

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 269 NVNAPQ-TLRYKF*GLSIVTTAAPLFKPKRMTASRQE*A*CCLPTRVDSQEVLPPVITQ 442
           +V  P+ TL Y+F GL+  T      K    TA+       CLP +  +QEV+ P+++Q
Sbjct: 596 SVTLPRDTLSYQFTGLTEETEYCTDLKG--FTAAGTGTGFSCLPGQTQAQEVIIPIVSQ 652


>SB_14431| Best HMM Match : HTH_5 (HMM E-Value=7.8e-06)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 224 CELVHPSKQLQKNNCTIFLG-LSVWQTGAYESPATEIGRC 108
           C    P K   +  C    G LS   TG +++P T +GRC
Sbjct: 18  CGRREPYKIRMRGRCGAAFGSLSFSATGGFKAPGTTLGRC 57


>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 498 YLSYEVEIPTPKSNPQNYNCVITGGRTSCESTRVGKQHYAYSC 370
           Y   E E P+ KS+P +++ V +  RT    +R  +    Y+C
Sbjct: 396 YTIQEAEPPSSKSSPGSHSVVASPQRTGHTRSRFARPSSRYAC 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,452,024
Number of Sequences: 59808
Number of extensions: 548135
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)