Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20048
         (727 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p pro...    29   8.5  
AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB...    29   8.5  
AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA...    29   8.5  

>AY122171-1|AAM52683.1| 1653|Drosophila melanogaster LD29171p
           protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = -2

Query: 723 VASLRICISNPARADAVLKSPWFELC*LVNSFAFAPFVMG*TRLLKTCYVIFCIA*TSVR 544
           V ++  C S P   +AV       L  +V S           + ++TCY I+  +   V 
Sbjct: 133 VVTIYGCFSGPQTDEAVQLQIIKALLTVVTSQHVEIHEFTLLQAVRTCYDIYLSSKNLVN 192

Query: 543 DHASGAVLRGSLNPGYLSYE---VEIPTPKSNPQN 448
              + A L   LN  +   E    E+P P SNP N
Sbjct: 193 QTTARATLTQMLNVIFARMENQVYELPPPNSNPTN 227


>AE014134-2399|AAN10848.1| 1614|Drosophila melanogaster CG7578-PB,
           isoform B protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = -2

Query: 723 VASLRICISNPARADAVLKSPWFELC*LVNSFAFAPFVMG*TRLLKTCYVIFCIA*TSVR 544
           V ++  C S P   +AV       L  +V S           + ++TCY I+  +   V 
Sbjct: 133 VVTIYGCFSGPQTDEAVQLQIIKALLTVVTSQHVEIHEFTLLQAVRTCYDIYLSSKNLVN 192

Query: 543 DHASGAVLRGSLNPGYLSYE---VEIPTPKSNPQN 448
              + A L   LN  +   E    E+P P SNP N
Sbjct: 193 QTTARATLTQMLNVIFARMENQVYELPPPNSNPTN 227


>AE014134-2398|AAF53331.2| 1653|Drosophila melanogaster CG7578-PA,
           isoform A protein.
          Length = 1653

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = -2

Query: 723 VASLRICISNPARADAVLKSPWFELC*LVNSFAFAPFVMG*TRLLKTCYVIFCIA*TSVR 544
           V ++  C S P   +AV       L  +V S           + ++TCY I+  +   V 
Sbjct: 133 VVTIYGCFSGPQTDEAVQLQIIKALLTVVTSQHVEIHEFTLLQAVRTCYDIYLSSKNLVN 192

Query: 543 DHASGAVLRGSLNPGYLSYE---VEIPTPKSNPQN 448
              + A L   LN  +   E    E+P P SNP N
Sbjct: 193 QTTARATLTQMLNVIFARMENQVYELPPPNSNPTN 227


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,008,188
Number of Sequences: 53049
Number of extensions: 798766
Number of successful extensions: 1781
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)