Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20048
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79975.2 68414.m09353 expressed protein                             31   0.78 
At1g79975.1 68414.m09352 expressed protein                             31   0.78 
At5g18970.1 68418.m02253 AWPM-19-like membrane family protein co...    28   5.5  

>At1g79975.2 68414.m09353 expressed protein
          Length = 152

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 175 IVQLFFCNCLDGWTSSQPTWLLSG 246
           I+ LFFC    GW SS   W+++G
Sbjct: 98  IIHLFFCIMYGGWPSSMAWWVVNG 121


>At1g79975.1 68414.m09352 expressed protein
          Length = 152

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 175 IVQLFFCNCLDGWTSSQPTWLLSG 246
           I+ LFFC    GW SS   W+++G
Sbjct: 98  IIHLFFCIMYGGWPSSMAWWVVNG 121


>At5g18970.1 68418.m02253 AWPM-19-like membrane family protein
           contains Pfam profile: PF05512 AWPM-19-like family
          Length = 171

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -2

Query: 183 LYYILRAVRLANWSV*KPRDRNRQMSVTL*PRSDIISIYVPI---TDGAFIIYCL 28
           LY+++  +  A+W+V    +R R+ + TL   + I  IY P+     G F+I+ L
Sbjct: 20  LYFVITII--ASWAVNHGIERTRESASTLSLPAKIFPIYFPVGNMATGFFVIFTL 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,969
Number of Sequences: 28952
Number of extensions: 369813
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)