BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20047 (639 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 139 3e-34 SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 134 1e-32 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 85 6e-18 SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 67 2e-12 SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 60 2e-10 SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 60 3e-10 SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 59 5e-10 SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 58 1e-09 SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 3e-09 SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 54 2e-08 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 53 3e-08 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 51 2e-07 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 50 2e-07 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 47 2e-06 SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 46 5e-06 SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 46 5e-06 SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 45 8e-06 SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 43 4e-05 SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 6e-05 SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 42 1e-04 SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 2e-04 SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 39 5e-04 SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002 SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.020 SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 30 0.25 SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 29 0.57 SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3 SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.7 SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.3 SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.0 SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.0 SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 26 4.0 SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 5.3 SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 5.3 SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 5.3 SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 7.0 SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.0 >SPAC1006.07 |||translation initiation factor eIF4A|Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 139 bits (337), Expect = 3e-34 Identities = 64/82 (78%), Positives = 77/82 (93%) Frame = +1 Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444 RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N Sbjct: 57 RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116 Query: 445 KCHACIGGTNVREDIRQLESGV 510 +CHACIGGT VR+D+ L++GV Sbjct: 117 ECHACIGGTLVRDDMAALQAGV 138 Score = 81.8 bits (193), Expect = 8e-17 Identities = 34/48 (70%), Positives = 44/48 (91%) Frame = +2 Query: 110 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253 ++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52 Score = 46.8 bits (106), Expect = 3e-06 Identities = 20/29 (68%), Positives = 25/29 (86%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596 HVVVGTPGRV+DMI RRAL + +++FVL Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVL 167 Score = 35.9 bits (79), Expect = 0.005 Identities = 16/19 (84%), Positives = 16/19 (84%) Frame = +2 Query: 581 QTFCSDEADEMLSRGFKDQ 637 Q F DEADEMLSRGFKDQ Sbjct: 163 QMFVLDEADEMLSRGFKDQ 181 >SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 134 bits (324), Expect = 1e-32 Identities = 66/94 (70%), Positives = 78/94 (82%), Gaps = 3/94 (3%) Frame = +1 Query: 235 ATRNNAFIQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 405 A ++ A IQ GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105 Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507 Q VV+ALGDH+N +CHACIGGT+V DI++L+ G Sbjct: 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139 Score = 58.4 bits (135), Expect = 8e-10 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Frame = +2 Query: 110 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262 M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57 Score = 39.5 bits (88), Expect = 4e-04 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596 HVV GTPGRV DMI RR L +K+ +L Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLIL 169 Score = 27.5 bits (58), Expect = 1.7 Identities = 10/14 (71%), Positives = 14/14 (100%) Frame = +2 Query: 596 DEADEMLSRGFKDQ 637 DEADE+L++GFK+Q Sbjct: 170 DEADELLNQGFKEQ 183 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 85.4 bits (202), Expect = 6e-18 Identities = 41/85 (48%), Positives = 56/85 (65%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435 + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V LG H Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138 Query: 436 LNAKCHACIGGTNVREDIRQLESGV 510 +N K GGT +R+DI +L V Sbjct: 139 MNVKVMVTTGGTTLRDDIIRLNDTV 163 Score = 42.3 bits (95), Expect = 6e-05 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +2 Query: 62 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 229 +N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69 Query: 230 IQQRAI 247 IQ+ +I Sbjct: 70 IQEESI 75 Score = 28.7 bits (61), Expect = 0.75 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596 H+VVGTPGRV D+ + + FV+ Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVM 192 >SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces pombe|chr 2|||Manual Length = 503 Score = 67.3 bits (157), Expect = 2e-12 Identities = 30/61 (49%), Positives = 46/61 (75%) Frame = +1 Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444 R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV +G + Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213 Query: 445 K 447 K Sbjct: 214 K 214 Score = 43.6 bits (98), Expect = 2e-05 Identities = 17/33 (51%), Positives = 28/33 (84%) Frame = +2 Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247 V++F+++ LK ELL+GIY+ F+KPS IQ++A+ Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145 Score = 37.5 bits (83), Expect = 0.002 Identities = 16/28 (57%), Positives = 21/28 (75%) Frame = +3 Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596 +V+GTPG V D++ RR L A IK+FVL Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVL 260 >SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 60.5 bits (140), Expect = 2e-10 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435 ++GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + ALG + Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101 Query: 436 LNAKCHACIGGTN-VREDI 489 LN K +GG + +R+ I Sbjct: 102 LNLKHALIVGGMDMIRQSI 120 Score = 25.8 bits (54), Expect = 5.3 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +3 Query: 510 HVVVGTPGRVYDMI 551 HVVV TPGR+ D+I Sbjct: 127 HVVVATPGRLADLI 140 >SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 60.1 bits (139), Expect = 3e-10 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435 I G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ + Sbjct: 86 ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145 Query: 436 L-NAKCHACIGGTNVREDI 489 L + + GG N+++D+ Sbjct: 146 LPDVRTAVFYGGINIKQDM 164 Score = 34.7 bits (76), Expect = 0.011 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVLMKLMKCCPEVSRTR 638 H+VV TPGR+ ++ + L N++K FVL + K V R Sbjct: 175 HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRR 217 Score = 33.1 bits (72), Expect = 0.035 Identities = 18/33 (54%), Positives = 19/33 (57%) Frame = +2 Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256 F D LK ELLR I GFE PS +QQ I S Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQS 85 >SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 465 Score = 59.3 bits (137), Expect = 5e-10 Identities = 28/71 (39%), Positives = 46/71 (64%) Frame = +1 Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444 RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A+G + Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143 Query: 445 KCHACIGGTNV 477 + +GG ++ Sbjct: 144 RSVVIVGGMDM 154 Score = 31.5 bits (68), Expect = 0.11 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = +2 Query: 14 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 193 M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59 Query: 194 GIYAYGFEKPSAIQQRAI 247 GF+ P+ IQQ AI Sbjct: 60 ACEKLGFKTPTPIQQEAI 77 >SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 58.0 bits (134), Expect = 1e-09 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 429 ++GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163 Query: 430 DHLNAKCHACIGGTNVREDIRQL 498 + + A +GG ++ E L Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLL 186 Score = 31.5 bits (68), Expect = 0.11 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247 F M L + LLR I+ GF+ P+ IQ++ I Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100 >SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 56.4 bits (130), Expect = 3e-09 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 417 ++G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+ Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108 Query: 418 IALGDHLNAKCHACIGGTNV 477 + L A C I NV Sbjct: 109 ----EKLTAFCSKHIRFINV 124 Score = 32.7 bits (71), Expect = 0.046 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +2 Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247 +TF D NL L R I+ FEKP+++Q I Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45 >SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 735 Score = 53.6 bits (123), Expect = 2e-08 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 4/85 (4%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 423 ++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++ Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133 Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498 +G + IGG N +E+ +L Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERL 158 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 53.2 bits (122), Expect = 3e-08 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Frame = +1 Query: 262 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 432 G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V + Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355 Query: 433 HLNAKCHACIGGTNVREDIRQL 498 + CIGG +++ ++L Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377 Score = 31.9 bits (69), Expect = 0.080 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247 +F MNL +L+G+ GFE P+ IQ + I Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 50.8 bits (116), Expect = 2e-07 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 8/92 (8%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQK 411 +Q +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343 Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 507 + L +C + +GG E Q+ G Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375 Score = 27.5 bits (58), Expect = 1.7 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRR 560 H+VV TPGR+ D + RR Sbjct: 377 HIVVATPGRLLDCLERR 393 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 50.4 bits (115), Expect = 2e-07 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Frame = +1 Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 435 G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI + + Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218 Query: 436 LNAKCHACIGGTNVREDIRQL 498 N + + GG V++ R L Sbjct: 219 PNIRVMSITGGLAVQKQQRLL 239 Score = 28.3 bits (60), Expect = 0.99 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVLM 599 HVVV TPGR++ +I L N K+ L+ Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLV 273 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 47.2 bits (107), Expect = 2e-06 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%) Frame = +1 Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414 A GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI + Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510 Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLESG 507 LN + GG +++ I L+ G Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541 Score = 26.6 bits (56), Expect = 3.0 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Frame = +2 Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPSSKDAM-LSLKPSQELEK 304 D + V ++ L + + I + G+EKP++IQ +AI + S +D + ++ S + Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471 Query: 305 LLLSLYR 325 LL ++R Sbjct: 472 FLLPMFR 478 >SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 46.0 bits (104), Expect = 5e-06 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423 + GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183 Query: 424 LGDHLNAKCHACIGGTNVREDIRQLESGV 510 L + + IGG N R + +L GV Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGV 212 Score = 32.7 bits (71), Expect = 0.046 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253 +E F D+ L E + + I GFE + IQ+R+I P Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122 >SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 709 Score = 46.0 bits (104), Expect = 5e-06 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Frame = +1 Query: 226 CNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 384 C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225 Query: 385 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGV 510 REL QQI V L + H C+ IGG + + ++ GV Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGV 270 >SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 578 Score = 45.2 bits (102), Expect = 8e-06 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 426 + GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +L Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259 Query: 427 GDHLNAKCHACIGGTNVREDIR 492 N K GG E R Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR 281 Score = 27.1 bits (57), Expect = 2.3 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +3 Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596 V++GTPGR+ D+I ++ + + VL Sbjct: 288 VIIGTPGRLLDLINDGSIDCSQVGYLVL 315 >SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 42.7 bits (96), Expect = 4e-05 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%) Frame = +1 Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 414 F++ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V Sbjct: 35 FLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91 >SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 42.3 bits (95), Expect = 6e-05 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Frame = +1 Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 411 RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI + Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133 >SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 41.5 bits (93), Expect = 1e-04 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Frame = +1 Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420 + GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+ Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216 Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLESGV 510 G + GG IR L GV Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGV 246 Score = 28.3 bits (60), Expect = 0.99 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +2 Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 244 V TF++ +L+ + GFE P+ IQQ+A Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 40.7 bits (91), Expect = 2e-04 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 20/112 (17%) Frame = +1 Query: 232 PATRNNAFI--QGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQ 363 P +N+ I GRD++A AQ+G+GKTA F IL Q R + Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253 Query: 364 A----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507 A LILAPTREL QI + + A GG ++R IRQ++ G Sbjct: 254 AYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305 Score = 27.9 bits (59), Expect = 1.3 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596 C ++ TPGR+ D+I R + IK VL Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVL 335 >SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 604 Score = 39.1 bits (87), Expect = 5e-04 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = +1 Query: 262 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 438 G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232 Query: 439 NAKCHACIGGTNVREDIRQL 498 + A G ++R + QL Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252 Score = 25.4 bits (53), Expect = 7.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 551 NSSCASCQHHQTFCSDEADEMLSRGFKD 634 N S QH + DEAD +L + F+D Sbjct: 277 NDESFSLQHLRYMVIDEADRLLDQSFQD 304 >SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 37.5 bits (83), Expect = 0.002 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Frame = +1 Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 408 N F + + QA++GTGKT F + + + + + ++IL+PTRELA QI Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129 Query: 409 KVVIALGDHLNAKCHACIGG-TNVRED 486 + L + IGG + +RE+ Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156 >SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1063 Score = 33.9 bits (74), Expect = 0.020 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +1 Query: 217 KTFCNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 396 KT+ + A N G VI + +GK+ + I ILQ + + A + PT+ LA Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369 Query: 397 QQIQKVVI 420 Q +K +I Sbjct: 370 QDQKKSLI 377 >SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 30.3 bits (65), Expect = 0.25 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +2 Query: 125 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSKD 265 LDT+W V + NL+ + + I + F PS I + MPS D Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230 >SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 29.1 bits (62), Expect = 0.57 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Frame = +2 Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPSSKDAMLSLKPSQELE 301 DTDWD +V + D++L+ RGI A G + + Q+ A + SSK +LK ++ Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673 Query: 302 KLLLSLYRFYNKS 340 L+ ++ + S Sbjct: 674 SESLTSFKGHTDS 686 >SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 27.9 bits (59), Expect = 1.3 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +2 Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 214 T D WD E FDD N + +GI+ F Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311 >SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces pombe|chr 2|||Manual Length = 505 Score = 27.5 bits (58), Expect = 1.7 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +1 Query: 292 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 408 G G T F+ SILQQI + SI +C + +P R + ++IQ Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132 >SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccharomyces pombe|chr 1|||Manual Length = 549 Score = 27.1 bits (57), Expect = 2.3 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 324 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 425 D+ TNR + SSFD S P+N++G ++ Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520 >SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 301 Score = 26.6 bits (56), Expect = 3.0 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +3 Query: 99 DLREWTLGHLTPT 137 DLREWTLG L P+ Sbjct: 110 DLREWTLGFLQPS 122 >SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein Pvg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 26.2 bits (55), Expect = 4.0 Identities = 11/24 (45%), Positives = 17/24 (70%) Frame = -1 Query: 438 QVITKSYHHLLNLLGQLSCGSQDQ 367 +++ KSYH+L N QLS ++DQ Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188 >SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schizosaccharomyces pombe|chr 1|||Manual Length = 356 Score = 26.2 bits (55), Expect = 4.0 Identities = 10/38 (26%), Positives = 20/38 (52%) Frame = -1 Query: 534 DLECPPPHDTTLQLANIFTDIGATNASMAFSIQVITKS 421 D+E PP LQ+AN+ GA + + + ++ ++ Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140 >SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual Length = 613 Score = 25.8 bits (54), Expect = 5.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 403 IQKVVIALGDHLNAKCHACIGGTNVRED 486 ++ + A+ DHL+ + CIG N+ ED Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161 >SPBC25H2.03 |||vacuolar protein involved in phosphoinositide metabolism|Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 25.8 bits (54), Expect = 5.3 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%) Frame = -1 Query: 498 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 397 +L NIFT + N+ FS+ +++++Y H NLL Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634 >SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 25.8 bits (54), Expect = 5.3 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 119 QGPFPEVHRNYLDPSMAHFWNPLANL 42 Q P P VH ++ PS A NPL ++ Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100 >SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces pombe|chr 3|||Manual Length = 581 Score = 25.4 bits (53), Expect = 7.0 Identities = 12/44 (27%), Positives = 21/44 (47%) Frame = -2 Query: 515 HMTPLSSWRISSRTLVPPMQAWHLAFK*SPRAITTF*ICWASSL 384 H TP S + LV +H+ F+ SP+ +T + W ++ Sbjct: 87 HFTPSSGFMNDPNGLVYTGGVYHMFFQYSPKTLTAGEVHWGHTV 130 >SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1568 Score = 25.4 bits (53), Expect = 7.0 Identities = 6/22 (27%), Positives = 18/22 (81%) Frame = +3 Query: 564 LHANTIKLFVLMKLMKCCPEVS 629 +H +T++ +++K++K CP+++ Sbjct: 270 VHTSTLQRELVLKILKACPDIT 291 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,934,320 Number of Sequences: 5004 Number of extensions: 65606 Number of successful extensions: 268 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 211 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 255 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 285732116 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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