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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20047
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...   139   3e-34
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...   134   1e-32
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    85   6e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    67   2e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    60   2e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    60   3e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    59   5e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    58   1e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    56   3e-09
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    54   2e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    53   3e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    51   2e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    50   2e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    47   2e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    46   5e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    46   5e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    45   8e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    43   4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    42   6e-05
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    42   1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    41   2e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    39   5e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    38   0.002
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    34   0.020
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    30   0.25 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    29   0.57 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   1.3  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   1.7  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   2.3  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   3.0  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    26   4.0  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   4.0  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   5.3  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   5.3  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    26   5.3  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   7.0  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.0  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score =  139 bits (337), Expect = 3e-34
 Identities = 64/82 (78%), Positives = 77/82 (93%)
 Frame = +1

Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
           RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+ALGD +N 
Sbjct: 57  RDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNV 116

Query: 445 KCHACIGGTNVREDIRQLESGV 510
           +CHACIGGT VR+D+  L++GV
Sbjct: 117 ECHACIGGTLVRDDMAALQAGV 138



 Score = 81.8 bits (193), Expect = 8e-17
 Identities = 34/48 (70%), Positives = 44/48 (91%)
 Frame = +2

Query: 110 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
           ++   ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP
Sbjct: 5   LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
           HVVVGTPGRV+DMI RRAL  + +++FVL
Sbjct: 139 HVVVGTPGRVHDMIQRRALPTDAVQMFVL 167



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +2

Query: 581 QTFCSDEADEMLSRGFKDQ 637
           Q F  DEADEMLSRGFKDQ
Sbjct: 163 QMFVLDEADEMLSRGFKDQ 181


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score =  134 bits (324), Expect = 1e-32
 Identities = 66/94 (70%), Positives = 78/94 (82%), Gaps = 3/94 (3%)
 Frame = +1

Query: 235 ATRNNAFIQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 405
           A ++ A IQ   GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QI
Sbjct: 46  AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105

Query: 406 QKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
           Q VV+ALGDH+N +CHACIGGT+V  DI++L+ G
Sbjct: 106 QNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYG 139



 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +2

Query: 110 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSK 262
           M+   L T  D   V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+   K
Sbjct: 6   MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
           HVV GTPGRV DMI RR L    +K+ +L
Sbjct: 141 HVVSGTPGRVTDMIRRRNLRTRNVKMLIL 169



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/14 (71%), Positives = 14/14 (100%)
 Frame = +2

Query: 596 DEADEMLSRGFKDQ 637
           DEADE+L++GFK+Q
Sbjct: 170 DEADELLNQGFKEQ 183


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 85.4 bits (202), Expect = 6e-18
 Identities = 41/85 (48%), Positives = 56/85 (65%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
           + GRD++A+A++GTGKTA F I  L+++DT   + Q LIL PTRELA Q  +V   LG H
Sbjct: 79  LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138

Query: 436 LNAKCHACIGGTNVREDIRQLESGV 510
           +N K     GGT +R+DI +L   V
Sbjct: 139 MNVKVMVTTGGTTLRDDIIRLNDTV 163



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +2

Query: 62  KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 229
           +N    D+ S+ G     P  +    + V +T    F+D  LK ELL GI+  GFE+PS 
Sbjct: 10  ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69

Query: 230 IQQRAI 247
           IQ+ +I
Sbjct: 70  IQEESI 75



 Score = 28.7 bits (61), Expect = 0.75
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
           H+VVGTPGRV D+  +     +    FV+
Sbjct: 164 HIVVGTPGRVLDLAGKGVADFSECTTFVM 192


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 30/61 (49%), Positives = 46/61 (75%)
 Frame = +1

Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
           R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI  VV  +G +   
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213

Query: 445 K 447
           K
Sbjct: 214 K 214



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 28/33 (84%)
 Frame = +2

Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
           V++F+++ LK ELL+GIY+  F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596
           +V+GTPG V D++ RR L A  IK+FVL
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVL 260


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
           ++GR+ I  A++G+GKTA F++ I+++         ALIL PTRELA QI +   ALG +
Sbjct: 42  LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101

Query: 436 LNAKCHACIGGTN-VREDI 489
           LN K    +GG + +R+ I
Sbjct: 102 LNLKHALIVGGMDMIRQSI 120



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMI 551
           HVVV TPGR+ D+I
Sbjct: 127 HVVVATPGRLADLI 140


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
           I G DV+ QA+SG GKTA F +S LQQI+    E   L+L  TRELA QI+        +
Sbjct: 86  ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145

Query: 436 L-NAKCHACIGGTNVREDI 489
           L + +     GG N+++D+
Sbjct: 146 LPDVRTAVFYGGINIKQDM 164



 Score = 34.7 bits (76), Expect = 0.011
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVLMKLMKCCPEVSRTR 638
           H+VV TPGR+  ++  + L  N++K FVL +  K    V   R
Sbjct: 175 HIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRR 217



 Score = 33.1 bits (72), Expect = 0.035
 Identities = 18/33 (54%), Positives = 19/33 (57%)
 Frame = +2

Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPS 256
           F D  LK ELLR I   GFE PS +QQ  I  S
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQS 85


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 28/71 (39%), Positives = 46/71 (64%)
 Frame = +1

Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
           RDVI  AQ+G+GKTA F++ ++Q++  +     A++LAPTRELA QI +   A+G  +  
Sbjct: 84  RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143

Query: 445 KCHACIGGTNV 477
           +    +GG ++
Sbjct: 144 RSVVIVGGMDM 154



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +2

Query: 14  MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 193
           M+ S ++ +ED    S N   +   S       +    D+  ++  +TF ++ + +EL  
Sbjct: 1   MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59

Query: 194 GIYAYGFEKPSAIQQRAI 247
                GF+ P+ IQQ AI
Sbjct: 60  ACEKLGFKTPTPIQQEAI 77


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIALG 429
           ++GRDV+  A++G+GKTA F I +++ + +++     +ALIL+P RELA Q  KVV    
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163

Query: 430 DHLNAKCHACIGGTNVREDIRQL 498
              + +  A +GG ++ E    L
Sbjct: 164 KGTDLRSVAIVGGVSLEEQFSLL 186



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
           F  M L + LLR I+  GF+ P+ IQ++ I
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 417
           ++G+D++AQA++G+GKTA + I IL+      QID + R   AL+L PTRELAQQ+  V+
Sbjct: 49  LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108

Query: 418 IALGDHLNAKCHACIGGTNV 477
               + L A C   I   NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124



 Score = 32.7 bits (71), Expect = 0.046
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
           +TF D NL   L R I+   FEKP+++Q   I
Sbjct: 14  KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 423
           ++GRD++  A++G+GKT  F + +++ +     TS+    AL+++PTRELA Q  + ++ 
Sbjct: 74  LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133

Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498
           +G   +      IGG N +E+  +L
Sbjct: 134 IGRLHSFSAGLIIGGNNYKEEKERL 158


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
 Frame = +1

Query: 262 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIALGD 432
           G+D++  A +G+GKTA F + IL+++      +   + LIL PTRELA Q   V   +  
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355

Query: 433 HLNAKCHACIGGTNVREDIRQL 498
             +     CIGG +++   ++L
Sbjct: 356 FTDIMVCLCIGGLSLKLQEQEL 377



 Score = 31.9 bits (69), Expect = 0.080
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 155 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
           +F  MNL   +L+G+   GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQK 411
           +Q +D+I  A++G+GKTA F I ++  I     + E        A++LAPTRELAQQIQ 
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343

Query: 412 VVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
                 + L  +C + +GG    E   Q+  G
Sbjct: 344 EGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRR 560
           H+VV TPGR+ D + RR
Sbjct: 377 HIVVATPGRLLDCLERR 393


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +1

Query: 262 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQIQKVVIALGDH 435
           G D+I +A +G+GKT  F I IL+    +   +  QAL++APTRELA QI +    +   
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPS 218

Query: 436 LNAKCHACIGGTNVREDIRQL 498
            N +  +  GG  V++  R L
Sbjct: 219 PNIRVMSITGGLAVQKQQRLL 239



 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVLM 599
           HVVV TPGR++ +I    L  N  K+  L+
Sbjct: 244 HVVVATPGRLWSVINENNLTGNFKKIKCLV 273


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
 Frame = +1

Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQKV 414
           A   GRDVI  A++G+GKT  F + + + I     ++  +   A+I+ PTRELA QI + 
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRE 510

Query: 415 VIALGDHLNAKCHACIGGTNVREDIRQLESG 507
                  LN +     GG  +++ I  L+ G
Sbjct: 511 CKPFLKLLNIRACCAYGGAPIKDQIADLKRG 541



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +2

Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--MPSSKDAM-LSLKPSQELEK 304
           D  + V ++    L  + +  I + G+EKP++IQ +AI  + S +D + ++   S +   
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471

Query: 305 LLLSLYR 325
            LL ++R
Sbjct: 472 FLLPMFR 478


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
           + GRDV+  A++G+GKT  F   +I +L  +    R     +I++PTRELA QI  V   
Sbjct: 124 LAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKE 183

Query: 424 LGDHLNAKCHACIGGTNVREDIRQLESGV 510
           L  + +      IGG N R +  +L  GV
Sbjct: 184 LLKYHHQTFGIVIGGANRRAEADKLVKGV 212



 Score = 32.7 bits (71), Expect = 0.046
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 253
           +E F D+ L E + + I   GFE  + IQ+R+I P
Sbjct: 88  IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
 Frame = +1

Query: 226 CNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 384
           C PA  N      +D   +AQ+G+GKT  + + I+Q++        T      A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225

Query: 385 RELAQQIQKVVIALGD----HLNAKCHACIGGTNVREDIRQLESGV 510
           REL QQI  V   L +    H    C+  IGG   + +  ++  GV
Sbjct: 226 RELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSEKARIRKGV 270


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAL 426
           + GRDV+  A++G+GKT  F I  LQ ++    +    + L+++PTRELA Q  + + +L
Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259

Query: 427 GDHLNAKCHACIGGTNVREDIR 492
               N K     GG    E  R
Sbjct: 260 IQGTNLKAVVVYGGAPKSEQAR 281



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596
           V++GTPGR+ D+I   ++  + +   VL
Sbjct: 288 VIIGTPGRLLDLINDGSIDCSQVGYLVL 315


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
 Frame = +1

Query: 253 FIQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 414
           F++ +D++ +A +G+GKT  + +    ++   DT      ALI+APTRELA QI  V
Sbjct: 35  FLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
 Frame = +1

Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 411
           RD++A A +G+GKT  +   ILQ++   +    +A+I+APTREL +QI +
Sbjct: 84  RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
 Frame = +1

Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 420
           + GRD++  + +G+GKT ++ +  +  I+             L+LAPTRELA QIQ+   
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216

Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLESGV 510
             G     +     GG      IR L  GV
Sbjct: 217 KFGKSSRIRNTCVYGGVPRGPQIRDLIRGV 246



 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 149 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 244
           V TF++      +L+ +   GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
 Frame = +1

Query: 232 PATRNNAFI--QGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQ 363
           P  +N+  I   GRD++A AQ+G+GKTA F   IL              Q      R  +
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253

Query: 364 A----LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
           A    LILAPTREL  QI +           +  A  GG ++R  IRQ++ G
Sbjct: 254 AYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQG 305



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596
           C ++  TPGR+ D+I R  +    IK  VL
Sbjct: 306 CDLLSATPGRLVDLIDRGRISLANIKFLVL 335


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +1

Query: 262 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQKVVIALGDHL 438
           G DV   A +G+GKT ++ I I+Q +   ++   + +++ PTREL  Q+ K         
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGA 232

Query: 439 NAKCHACIGGTNVREDIRQL 498
             +  A  G  ++R +  QL
Sbjct: 233 GLQVCAWTGQKSLRHETYQL 252



 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 551 NSSCASCQHHQTFCSDEADEMLSRGFKD 634
           N    S QH +    DEAD +L + F+D
Sbjct: 277 NDESFSLQHLRYMVIDEADRLLDQSFQD 304


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
 Frame = +1

Query: 244 NNAFIQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQIQ 408
           N  F    + + QA++GTGKT  F +   + +       +  +  ++IL+PTRELA QI 
Sbjct: 70  NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIF 129

Query: 409 KVVIALGDHLNAKCHACIGG-TNVRED 486
           +    L      +    IGG + +RE+
Sbjct: 130 EEARKLTYGTGIRVSYAIGGNSKMREE 156


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = +1

Query: 217 KTFCNPATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 396
           KT+ + A   N    G  VI    + +GK+  + I ILQ +     +  A  + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369

Query: 397 QQIQKVVI 420
           Q  +K +I
Sbjct: 370 QDQKKSLI 377


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 125 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSKD 265
           LDT+W   V   +  NL+ + +  I +  F  PS I  +  MPS  D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +2

Query: 128 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPSSKDAMLSLKPSQELE 301
           DTDWD +V +  D++L+    RGI A G  +    + Q+ A + SSK    +LK ++   
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673

Query: 302 KLLLSLYRFYNKS 340
              L+ ++ +  S
Sbjct: 674 SESLTSFKGHTDS 686


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 122 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 214
           T D  WD   E FDD N  +   +GI+   F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +1

Query: 292 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 408
           G G T  F+ SILQQI    + SI +C  +  +P  R + ++IQ
Sbjct: 89  GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 324 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEGGDSS 425
           D+ TNR +    SSFD  S     P+N++G  ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  DLREWTLGHLTPT 137
           DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 438 QVITKSYHHLLNLLGQLSCGSQDQ 367
           +++ KSYH+L N   QLS  ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 534 DLECPPPHDTTLQLANIFTDIGATNASMAFSIQVITKS 421
           D+E PP     LQ+AN+    GA + + +    ++ ++
Sbjct: 103 DMESPPVQGIRLQMANLLASAGALHKAWSMYWDILERT 140


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 403 IQKVVIALGDHLNAKCHACIGGTNVRED 486
           ++ +  A+ DHL+   + CIG  N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 498 QLANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 397
           +L NIFT +      N+   FS+ +++++Y H  NLL
Sbjct: 598 KLQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 119 QGPFPEVHRNYLDPSMAHFWNPLANL 42
           Q P P VH ++  PS A   NPL ++
Sbjct: 75  QNPPPSVHSSHKQPSKARSPNPLLSM 100


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 515 HMTPLSSWRISSRTLVPPMQAWHLAFK*SPRAITTF*ICWASSL 384
           H TP S +      LV     +H+ F+ SP+ +T   + W  ++
Sbjct: 87  HFTPSSGFMNDPNGLVYTGGVYHMFFQYSPKTLTAGEVHWGHTV 130


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 6/22 (27%), Positives = 18/22 (81%)
 Frame = +3

Query: 564 LHANTIKLFVLMKLMKCCPEVS 629
           +H +T++  +++K++K CP+++
Sbjct: 270 VHTSTLQRELVLKILKACPDIT 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,320
Number of Sequences: 5004
Number of extensions: 65606
Number of successful extensions: 268
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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