Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20047
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 4e-33
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 86 2e-17
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 82 4e-16
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 82 4e-16
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 74 9e-14
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 62 4e-10
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 4e-10
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 9e-10
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 59 3e-09
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 57 1e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 56 3e-08
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 3e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 55 4e-08
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 50 2e-06
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 47 1e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 44 1e-04
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 41 7e-04
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 36 0.021
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 32 0.34
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 30 1.8
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 29 2.4
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8) 29 3.2
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 4.2
SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 28 7.4
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 28 7.4
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.4
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.4
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 7.4
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 28 7.4
SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_48097| Best HMM Match : rve (HMM E-Value=2.6e-17) 27 9.7
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 27 9.7
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 140 bits (338), Expect = 1e-33
Identities = 68/97 (70%), Positives = 82/97 (84%), Gaps = 6/97 (6%)
Frame = +1
Query: 238 TRNNAFIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQ 399
T+N+ + RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 400 QIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 510
QIQKVV+ALGD+++ KCHACIGGTNVRED +LE GV
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNVREDRMKLEEGV 210
Score = 81.4 bits (192), Expect = 6e-16
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = +2
Query: 119 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPSSKD 265
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI P ++
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAIRPCCQE 100
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +3
Query: 501 EWCHVVVGTPGRVYDMITRRALHANTIKLFVL 596
E HVVVGTPGRV+DMI R L+ IKLFVL
Sbjct: 208 EGVHVVVGTPGRVFDMINRGVLNTRDIKLFVL 239
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 587 FCSDEADEMLSRGFKDQ 637
F DEADEMLSRGFKDQ
Sbjct: 237 FVLDEADEMLSRGFKDQ 253
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 138 bits (334), Expect = 4e-33
Identities = 63/84 (75%), Positives = 77/84 (91%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+ALGD+
Sbjct: 32 LKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALGDY 91
Query: 436 LNAKCHACIGGTNVREDIRQLESG 507
++ +CHACIGGTN+ EDIR+L+ G
Sbjct: 92 MSVQCHACIGGTNIGEDIRKLDYG 115
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
H+V GTPGRV+DMI RR L +IK+ VL
Sbjct: 117 HIVSGTPGRVFDMIRRRNLRTRSIKMLVL 145
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 209 GFEKPSAIQQRAIMPSSK 262
GFEKPSAIQQRAI P K
Sbjct: 16 GFEKPSAIQQRAIKPILK 33
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +2
Query: 596 DEADEMLSRGFKDQ 637
DEADEML++GFK+Q
Sbjct: 146 DEADEMLNKGFKEQ 159
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 86.2 bits (204), Expect = 2e-17
Identities = 37/53 (69%), Positives = 48/53 (90%)
Frame = +1
Query: 349 IRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
+RE QAL+L+PTRELA QIQKVV+ALGD+++ +CHACIGGTN+ EDIR+L+ G
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYG 53
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/81 (44%), Positives = 58/81 (71%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+ A+ GGT++++DI +L
Sbjct: 142 MGAQVMVTTGGTSLKDDILRL 162
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
HV+V TPGRV D++ ++ + ++ V+
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVM 202
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/81 (44%), Positives = 58/81 (71%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+ GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I LG H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+ A+ GGT++++DI +L
Sbjct: 142 MGAQVMVTTGGTSLKDDILRL 162
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D LK ELL GI+ GF+KPS IQ+ +I
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESI 78
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
HV+V TPGRV D++ ++ + ++ V+
Sbjct: 174 HVIVATPGRVLDLMKKKLADMSKCQMLVM 202
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLN 441
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A+G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 442 A-KCHACIGGTNVREDIRQLES 504
C IGG ++ ED + L+S
Sbjct: 110 GLACKVFIGGISLEEDKKALKS 131
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVLMKLMKCCPE 623
CH+ VGTPGRV +I ++ L ++++F+L + K E
Sbjct: 132 CHIAVGTPGRVKYLIEQKYLKTESVRMFILDEADKLLDE 170
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F + L LLRG+ GFEKPS IQ +AI
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAI 44
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNA 444
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + ALG +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 445 KCHACIGGTNV 477
KC +GG ++
Sbjct: 62 KCAVIVGGIDM 72
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 62.1 bits (144), Expect = 4e-10
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQKVVIALG 429
+ G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK + LG
Sbjct: 316 MDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQKFIKELG 375
Query: 430 DHLNAKCHACIGGTNV 477
K +GG +V
Sbjct: 376 RFTGLKSSVILGGDSV 391
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 60.9 bits (141), Expect = 9e-10
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Frame = +1
Query: 262 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVIAL 426
GRD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF 575
Query: 427 GDHLNAKCHACIGGTNVREDIRQLESG 507
DH K C GG +V QLE G
Sbjct: 576 SDHTPIKVCVCYGGVSVPYQASQLERG 602
Score = 35.1 bits (77), Expect = 0.049
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596
CH +VGTPGR+ D ++R ++ +I+ +L
Sbjct: 603 CHFLVGTPGRLQDFVSREKIYLGSIQHLIL 632
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K +
Sbjct: 82 ILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKY 141
Query: 436 L-NAKCHACIGGTNVREDIRQLES 504
+ N K GG N+++D + L++
Sbjct: 142 MSNIKIAVFFGGINIKKDQQTLKT 165
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
H+VVGTPGR+ + + L+ K F+L
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFIL 197
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K +
Sbjct: 82 ILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKY 141
Query: 436 L-NAKCHACIGGTNVREDIRQLES 504
+ N K GG N+++D + L++
Sbjct: 142 MSNIKIAVFFGGINIKKDQQTLKT 165
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 510 HVVVGTPGRVYDMITRRALHANTIKLFVL 596
H+VVGTPGR+ + + L+ K F+L
Sbjct: 169 HIVVGTPGRILALTREKTLNLKHAKHFIL 197
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 57.2 bits (132), Expect = 1e-08
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQIQ 408
I GRDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 746 IAGRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIY 805
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
+ C GG +V +RQL+SG
Sbjct: 806 LEARKFAHGTMLRPVVCYGGVSVSHQLRQLQSG 838
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596
C+++VGTPGR+ D I + + ++ +L
Sbjct: 839 CNLLVGTPGRLTDFIEKGKVSLKGLQFLIL 868
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/56 (48%), Positives = 40/56 (71%)
Frame = +1
Query: 268 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A+G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +2
Query: 152 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
++F+++ L L RG+Y GF KPS IQ+ A+
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETAL 134
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +3
Query: 492 PTGEWC--HVVVGTPGRVYDMITR-RALHANTIKLFVL 596
P G+ C H+++GTPG + D I + + + +FVL
Sbjct: 215 PRGQKCTDHIIIGTPGTLLDWIRKSKCFEPRKVSVFVL 252
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 9/82 (10%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 408
+Q RD+I A++G+GKTA F+I +L I + + + ALILAPTRELAQQI+
Sbjct: 136 LQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIE 195
Query: 409 KVVIALGDHLNAKCHACIGGTN 474
+ ++ G L + + IGG +
Sbjct: 196 EEILKFGRPLGIRTVSVIGGAD 217
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 55.6 bits (128), Expect = 3e-08
Identities = 31/81 (38%), Positives = 46/81 (56%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIALGDH 435
+QGRD I A++G+GKTA F++ ILQ++ A++L PTRELA QI LG
Sbjct: 42 LQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLGRP 101
Query: 436 LNAKCHACIGGTNVREDIRQL 498
+ K +GG ++ + L
Sbjct: 102 IGLKEAVIVGGLDMMKQALSL 122
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIA 423
+ GRDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q +V++
Sbjct: 85 LSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVK 144
Query: 424 LGDHLNAKCHACIGGTNVREDIRQL 498
+G+ + IGG +++ + +++
Sbjct: 145 IGNKHDLSAGLIIGGKDLKNEQKRI 169
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVI 420
+ GRD+I A++G+GKTA F + I+ Q + + + LI APTREL QQI
Sbjct: 552 LSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEAR 611
Query: 421 ALGDHLNAKCHACIGGTNVREDIRQLESG 507
G N A GG N E + L+ G
Sbjct: 612 RFGKAYNIHVVAVFGGGNKYEQSKALQEG 640
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = +1
Query: 235 ATRNNAFIQGRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELA 396
A+ N G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA
Sbjct: 101 ASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELA 160
Query: 397 QQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 510
+Q+ L +L C GG + SG+
Sbjct: 161 KQVGNEFENLKSNLEVYC--IYGGMPYEPQENAINSGL 196
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596
V+VGTPGR+ D + + L + +K VL
Sbjct: 198 VLVGTPGRILDFMRQGTLDLSKLKHVVL 225
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQ---QIDTSIRE-CQALILAPTRELAQQIQKVVIA 423
++GRD++ A++G+GKT F + +++ ++ R +I++PTREL+ Q V
Sbjct: 607 LKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVARD 666
Query: 424 LGDHLNAKCHACIGGTNVREDIRQLESGV 510
L H N +GG N + + +L+ GV
Sbjct: 667 LLKHHNFTYGIIMGGVNRKAEAERLQKGV 695
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +1
Query: 367 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 510
L+L PTRELAQQ+Q+V ++G H + GG IR+LE GV
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGGAPKGPQIRELERGV 183
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 45.2 bits (102), Expect = 5e-05
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALI 372
A + RD+I A++G+GKT F I I+Q I+ S E Q ALI
Sbjct: 164 ALLYHRDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALI 223
Query: 373 LAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLE 501
+APTRELA Q++ ++ + + K A +GG + R L+
Sbjct: 224 MAPTRELALQVKDHLVKAAKYTSVKVAAIVGGMAAPKQQRLLK 266
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +1
Query: 436 LNAKCHACIGGTNVREDIRQLESGV 510
++ KCHACIGGTNVRED +LE GV
Sbjct: 1 MHVKCHACIGGTNVREDRMKLEEGV 25
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 501 EWCHVVVGTPGRVYDMITRRAL 566
E HVVVGTPGRV+DMI R L
Sbjct: 23 EGVHVVVGTPGRVFDMINRGVL 44
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 402
+ G+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 45 LMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 41.1 bits (92), Expect = 7e-04
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQI 405
+ GRD+I A++G+GKT +S+ + + T ALIL PTREL QQ+
Sbjct: 107 MSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQV 161
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 134 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
D + +E+F D+NL EL + F+ P+ IQ +++
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSL 103
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 352 RECQALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
R+ A+++ PTRELA QI + N +C GGT + E I +L+ G
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGISEQIAELKRG 194
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 503 VVSCGGGHSRSCI*YDNSSCASCQHHQTFCSDEADEMLSRGFKDQ 637
++ C G + +N +CQ DEAD M GF+ Q
Sbjct: 197 IIVCTPGRMIDMLTANNGRVTNCQRCTYLVLDEADRMFDMGFEPQ 241
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQ 408
I VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI
Sbjct: 413 IHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQIL 472
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLESGV 510
K +L H + IGG + LES V
Sbjct: 473 KTAKSLCHHARFRSVGLIGGRKQKWMRDDLESPV 506
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596
CH++V TPGR+ DM+ R + ++I+ VL
Sbjct: 976 CHLLVATPGRLVDMMDRGRVGLDSIRFLVL 1005
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQI 339
RD++A AQ+G+GKTA F I IL +I
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRI 937
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 158 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 247
F+D++L E LL + G++KP+ +Q+ AI
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI 906
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +2
Query: 29 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 199
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 200 YAYGFEKPSA 229
GF + A
Sbjct: 79 LLDGFPRTVA 88
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 32.3 bits (70), Expect = 0.34
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +1
Query: 265 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA-QQIQKVVIALGD 432
+ ++ ++++GTGK+ F +L + R +I+ PTRELA Q + +V LGD
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQMLYEVSRLLGD 251
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 32.3 bits (70), Expect = 0.34
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -2
Query: 353 RMLVSICCRIDIEKVAVFPVPDWA*AITSRPWMKALLRVAGLQKVFQNHR-RICLSTILL 177
R+ VS+ C ++ + FP+PD + RPW K +R L VF + + +
Sbjct: 652 RLNVSLSCP-ELSVMLRFPIPDLRPVVERRPWWKQAVRDESLLLVFSAFKFNTVVCSADP 710
Query: 176 *GSCHRRFRQLDP-SRCQVSQGPFPEVHRNYL 84
S RF+Q+D + P P +H + L
Sbjct: 711 AASYELRFQQMDGYYKESAGATPIPVMHSSPL 742
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 513 VVVGTPGRVYDMITRRALHANTIKLFVL 596
+V GTPG++ D IT + + +K F+L
Sbjct: 138 IVTGTPGKLNDFITTDKISLHQVKFFIL 165
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 68 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 196
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 211 F*KTFCNPATRNNAF-IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 357
F KT + N F + G DV+A + SGT K + F ++++ D+ R+
Sbjct: 229 FLKTTPSMEDENVVFGVNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
Length = 210
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +2
Query: 596 DEADEMLSRGFKDQ 637
DEADEML++GFK+Q
Sbjct: 42 DEADEMLNKGFKEQ 55
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 334 QIDTSIRECQALILAPTRELAQQIQKVVIALGDHLNAKCHACI 462
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 11 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 103
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_15811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 450 AFSIQVITKSYHHLLNLLGQLSCGSQDQSLTFTNACID 337
A ++Q +TK+Y HL+N+ G +++ T C D
Sbjct: 201 AHALQTLTKAYRHLMNVTGN---RDKEEKANATEQCAD 235
>SB_41743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1436
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 611 FHQLHQNKKFDGVGMKRTTSYH 546
FHQLH K GV RTT YH
Sbjct: 969 FHQLH---KISGVSKSRTTPYH 987
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 11 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 190
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 191 RG--IYA--YGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNK 337
++A +GF K + + + ++ + +D + +++ L+L + ++K
Sbjct: 324 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 375
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 11 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 190
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 191 RG--IYA--YGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNK 337
++A +GF K + + + ++ + +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 11 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 190
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 191 RG--IYA--YGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNK 337
++A +GF K + + + ++ + +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 53 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 184
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 53 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 184
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Frame = +2
Query: 11 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 190
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 191 RG--IYA--YGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNK 337
++A +GF K + + + ++ + +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQLLL-TVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 205 GVYASQQFFFEVHVIEGFDNLIPVGVKC 122
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKT 306
I GRDV+A AQ+G+GKT
Sbjct: 169 IAGRDVMACAQTGSGKT 185
>SB_8812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +1
Query: 430 DHLNAKCHACIG-GTNVRED-IRQLESGVM 513
D++N++C C+G G ++ ++ RQL G+M
Sbjct: 140 DYINSRCRRCVGIGEDLAKNFFRQLTEGIM 169
>SB_48097| Best HMM Match : rve (HMM E-Value=2.6e-17)
Length = 169
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -2
Query: 611 FHQLHQNKKFDGVGMKRTTSYH 546
FHQLH K GV RTT YH
Sbjct: 65 FHQLH---KVSGVSKSRTTPYH 83
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 250 AFIQGRDVIAQAQSGTGKTATFSISILQQIDTS 348
+ ++GRDV A G+GK + + I+ QI S
Sbjct: 220 SLLRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,384,026
Number of Sequences: 59808
Number of extensions: 521602
Number of successful extensions: 2301
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2280
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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