Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20047
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 50 3e-08
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 1.9
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 23 1.9
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 23 3.3
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 4.4
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 4.4
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 21 7.6
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 21 7.6
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.6
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 49.6 bits (113), Expect = 3e-08
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 9/93 (9%)
Frame = +1
Query: 256 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQ 408
+ GRD++A AQ+G+GKTA F++ I+ + +D + E Q +I++PTREL QI
Sbjct: 231 MNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290
Query: 409 KVVIALGDHLNAKCHACIGGTNVREDIRQLESG 507
+ ++ + K GGT+V +L +G
Sbjct: 291 QQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAG 323
Score = 31.1 bits (67), Expect = 0.009
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 507 CHVVVGTPGRVYDMITRRALHANTIKLFVL 596
CH++V TPGR+ D + + + ++++ VL
Sbjct: 324 CHILVATPGRLLDFVEKGRVKFSSVQFLVL 353
Score = 28.3 bits (60), Expect = 0.066
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--IMPSSKDAM 271
Q +E+F+ L+ +L I G++KP+ +Q+ A I+ + +D M
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLM 237
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.4 bits (48), Expect = 1.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 287 SQELEKLLLSLYRFYNKSIQAFVNV 361
S++ E+L+ L+R YNK I+ N+
Sbjct: 24 SEDEERLVRDLFRGYNKLIRPVQNM 48
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 478 GHWCHQCKHGI*HSS 434
G CH+CK+GI SS
Sbjct: 40 GDSCHKCKYGIAMSS 54
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 22.6 bits (46), Expect = 3.3
Identities = 10/41 (24%), Positives = 18/41 (43%)
Frame = +2
Query: 221 PSAIQQRAIMPSSKDAMLSLKPSQELEKLLLSLYRFYNKSI 343
PS P S+ + +L+P ++ YR YN ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 623 LWTTFHQLHQNKKFDGVGMKRTTSYHI 543
+W H ++ +FD + R SY I
Sbjct: 89 MWEQSHLTWKSSEFDSINSIRVKSYEI 115
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 4.4
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 456 LHWWHQCP 479
LH WH CP
Sbjct: 470 LHHWHHCP 477
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 4.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +1
Query: 172 PQRRIVERHIRLWF*KTFC----NPATRNNA 252
P +++ I WF TFC N AT NA
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNA 551
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 271 HRVLG*RHYCALLDCRRFFKTIGVYASQ 188
H + G +H C++ R K GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.4 bits (43), Expect = 7.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 271 HRVLG*RHYCALLDCRRFFKTIGVYASQ 188
H + G +H C++ R K GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 7.6
Identities = 10/39 (25%), Positives = 18/39 (46%)
Frame = +2
Query: 188 LRGIYAYGFEKPSAIQQRAIMPSSKDAMLSLKPSQELEK 304
L +YA +K SA + I+ S +P Q+ ++
Sbjct: 1473 LHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQ 1511
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,149
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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