Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20046
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4RNM1 Cluster: Chromosome 21 SCAF15012, whole genome s...    43   0.008
UniRef50_Q9VZV5 Cluster: CG32486-PD; n=7; Coelomata|Rep: CG32486...    41   0.032
UniRef50_Q0R0E3 Cluster: Ubiquitin ligase 2; n=1; Symbiodinium s...    36   0.91 
UniRef50_Q1RLC3 Cluster: Zinc finger protein; n=1; Ciona intesti...    34   2.8  

>UniRef50_Q4RNM1 Cluster: Chromosome 21 SCAF15012, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 21 SCAF15012, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 196

 Score = 42.7 bits (96), Expect = 0.008
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +1

Query: 253 ELEYRLGGILCCAVCLDLPQSAVYQV 330
           +LE RL  +LCC VCLDLP+++VYQV
Sbjct: 72  KLEERLYSVLCCTVCLDLPKASVYQV 97


>UniRef50_Q9VZV5 Cluster: CG32486-PD; n=7; Coelomata|Rep: CG32486-PD
           - Drosophila melanogaster (Fruit fly)
          Length = 412

 Score = 40.7 bits (91), Expect = 0.032
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +1

Query: 253 ELEYRLGGILCCAVCLDLPQSAVYQ 327
           +L +R+   LCCAVCLDLP++A+YQ
Sbjct: 102 KLAHRISNALCCAVCLDLPKTAMYQ 126


>UniRef50_Q0R0E3 Cluster: Ubiquitin ligase 2; n=1; Symbiodinium sp.
           C3|Rep: Ubiquitin ligase 2 - Symbiodinium sp. C3
          Length = 163

 Score = 35.9 bits (79), Expect = 0.91
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 253 ELEYRLGGILCCAVCLDLPQSAVYQVK 333
           +LE RL  IL C VCLDLP  +V+Q +
Sbjct: 43  KLEARLNDILSCTVCLDLPTKSVFQCR 69


>UniRef50_Q1RLC3 Cluster: Zinc finger protein; n=1; Ciona
           intestinalis|Rep: Zinc finger protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 330

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = +1

Query: 253 ELEYRLGGILCCAVCLDLPQSAVYQ 327
           +LE RL  IL C VCLDLP SA  Q
Sbjct: 36  KLEERLNHILSCTVCLDLPTSACMQ 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,413,675
Number of Sequences: 1657284
Number of extensions: 11503238
Number of successful extensions: 24203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24199
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)