Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20046
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)            28   8.0  

>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = -3

Query: 631  DTLLCYLNTQKEYRTKLSAR-KSI 563
            ++L+C LNTQKEY  +LS + KSI
Sbjct: 3116 ESLVCELNTQKEYVNQLSEKVKSI 3139


>SB_4813| Best HMM Match : EMP24_GP25L (HMM E-Value=3.9e-13)
          Length = 348

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 327 GKVDNSRSYLPKGDFLYIYYIT*LRNIFVVYICSLLHFVST*WSLWLKGRIQCEVEL 497
           GK+  S+ Y  +G F +  + T   ++    IC  LH  ST WSLW  GR++  +++
Sbjct: 207 GKIIMSKYYSSEGRFTFTSH-TPGEHV----IC--LHSNSTRWSLWAGGRLRIHLDI 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,532,179
Number of Sequences: 59808
Number of extensions: 368950
Number of successful extensions: 678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)