Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20046
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   5.3  

>AC006720-1|AAF60446.1|  350|Caenorhabditis elegans Hypothetical
           protein Y17G9B.5 protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -1

Query: 432 ATNKYRQQIYFVIKL--CNKYIENRLLEGKS 346
           AT K ++ +Y++ KL   NKY++ R +EGKS
Sbjct: 149 ATKKVKRMLYWMPKLKHSNKYLDRRHVEGKS 179


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = -1

Query: 462  IVTIKY*QSAATNKYRQQIYFVIKLCNKYIENRLLEGKSDCCLLYLVYSRLGQIEANCAA 283
            I T K   S +TN YR+    +  L       R L  ++ C  +YL ++ L    A  + 
Sbjct: 2109 IETFKTSPSISTNAYREVCISISYLLLVAASRRKLTTRTGCAAIYLAWNDLKNEAAKTSG 2168

Query: 282  QNATEPVL 259
             N ++ +L
Sbjct: 2169 INCSKTLL 2176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,707,230
Number of Sequences: 27780
Number of extensions: 289428
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)