Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20046
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.2  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 225 VEC*RLMPVRTRVQARWHFVLRSLPRSAPIGCIPGKVDNSRSYLP 359
           + C R  P R  V+   +F+        P G +  KV+N  + LP
Sbjct: 270 IRCLRYRPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLP 314


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 225 VEC*RLMPVRTRVQARWHFVLRSLPRSAPIGCIPGKVDNSRSYLP 359
           + C R  P R  V+   +F+        P G +  KV+N  + LP
Sbjct: 270 IRCLRYRPARAIVETLANFMRFYYNPFTPFGPVTEKVNNDSNSLP 314


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 397 YEIYLLSIFVRCCTLSVLN 453
           +  YL+ I++ CC L +++
Sbjct: 241 FSYYLIQIYIPCCMLVIVS 259


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 397 YEIYLLSIFVRCCTLSVLN 453
           +  YL+ I++ CC L +++
Sbjct: 241 FSYYLIQIYIPCCMLVIVS 259


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 445 LTKCSNEQI*TTNIFR 398
           L+KC N  + T N+FR
Sbjct: 708 LSKCHNRNVTTCNMFR 723


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 363 LLEGKSDCCLLYLVYSRLGQIEA 295
           LL+   D C + +VYS LG I A
Sbjct: 84  LLQNIIDICWITMVYSLLGIIIA 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,112
Number of Sequences: 438
Number of extensions: 3746
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)