Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20046
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase fam...    27   8.6  
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    27   8.6  
At1g66110.1 68414.m07503 hypothetical protein contains Pfam prof...    27   8.6  

>At2g34980.1 68415.m04292 phosphatidylinositolglycan synthase family
           protein similar to SP|Q92535 Phosphatidylinositol-glycan
           biosynthesis, class C protein (PIG-C) {Homo sapiens}
          Length = 303

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 368 FSIYLLHNLITKYICCLYLFVAALCQYLMVTM 463
           +SIY LH L       L L V  +C Y ++ M
Sbjct: 250 YSIYALHRLFFLVFLSLVLLVNVVCPYWLIRM 281


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 213 CLRDVEC*RLMPVRTRVQARWH-FVLRSLPRSAPIGCIPGKVDNSRS 350
           C  ++ C    P+ +     WH  +L   PR AP+ C    + +SRS
Sbjct: 245 CGMNIACVEKKPLLSIDHPEWHEHILSLFPRQAPLPCSVCALPHSRS 291


>At1g66110.1 68414.m07503 hypothetical protein contains Pfam profile
           PF04510: Family of unknown function (DUF577)
          Length = 338

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 236 EADASENSSTGSVAFCAAQFASICPNRLYTR*SRQQSLLPSKRRFSIYLLHNLIT 400
           E + S +SS          F +I  ++L    S    + P  R FS+YLL +L+T
Sbjct: 53  ETEQSSSSSKLLYEVFTKHFPNILVSKLLQIYSSGTDITPKIRSFSLYLLDSLLT 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,556,432
Number of Sequences: 28952
Number of extensions: 258342
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)