Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20045X
(339 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.009
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.78
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 0.78
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.78
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 1.4
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 1.4
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 2.4
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 4.2
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 24 5.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 5.5
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 24 7.3
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 23 9.6
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 33.5 bits (73), Expect = 0.009
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 55 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 210
++ A+AG+ LS + N+D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 0.78
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 180 FQALTDSTVVVAGEDAVVQFLLEVLV 103
F +T V+V EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 0.78
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 109 DLEEKLYNSILTGDYDSA--VRQSLEYESQGKGSIIENVVNNLIIDKRRNTWSTATSCGS 282
D EE L N+ + + S +R S G + + V ++ K R W+ G
Sbjct: 449 DYEENLKNTYVFKELYSVRNIRPSFHSFLGNYGGMAYSAVEAYVL-KGRVPWTLKHKGGD 507
Query: 283 ATAQEIVTKYFPLNF 327
A A + +KY P+N+
Sbjct: 508 AKATKSASKYKPINY 522
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.78
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 103 NQDLEEKLYNSILTGDYDSAVRQSLE 180
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.2 bits (55), Expect = 1.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 166 RQSLEYESQGKGSIIENVVNNLIIDKRRNTWST 264
++S++ ES K S ENV+ +D +RN T
Sbjct: 62 KESIKDESSAKSSETENVLEFATLDSKRNVNDT 94
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 68 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 178
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 2.4
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 29 NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 175
N S + C SP A A + P+TL T ASS T+ + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 4.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 254 VFRLLSMIRLLTTFSMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSS 114
+F L + T+ + P P +S K S SP+R+ L SFSS
Sbjct: 120 LFGYLQSSGIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSS 166
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 5.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 134 LLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILLGAFQI 3
++YS++S S + SA S +L + +AN SF L A I
Sbjct: 465 VVYSYTSSSSMPSSAIPSFNISLISQNAVANAGNSFSPLSAMVI 508
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 119 SSRSWLEVSADSSTTPALAASMHI 48
+S S+ V +DSSTTP +++S+ +
Sbjct: 318 TSDSFDSVLSDSSTTPTISSSVQV 341
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 76 VVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLE 180
VVE T++QD E+++ N L + D + L+
Sbjct: 141 VVEYMNKTASQDFEDEVINEGLESEIDGSSHNLLD 175
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 160 AVRQSLEYESQGKGSIIENVVNNLIIDK 243
+ QSL + KGSI EN V + +D+
Sbjct: 28 STEQSLGTFEESKGSITENYVQDSSVDE 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,670
Number of Sequences: 5004
Number of extensions: 24540
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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