Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20045X
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 28 1.6
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151... 28 1.6
03_05_0975 + 29333960-29334171,29336442-29336523,29336663-293366... 28 2.1
04_01_0613 - 8042568-8042686,8043107-8043206,8043550-8043594,804... 27 2.8
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437... 27 2.8
04_04_0018 - 22178972-22179179,22179264-22179502 27 3.8
01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625 27 3.8
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 27 5.0
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547... 24 5.3
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 26 6.6
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 26 6.6
01_06_1747 + 39627938-39628441 26 6.6
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 26 8.7
06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750 26 8.7
03_02_0915 + 12360079-12360095,12360225-12361353 26 8.7
02_05_0499 - 29534462-29535315,29535871-29537221 26 8.7
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 245 LLSMIRLLTTFSMMEPLPWL--SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTP 72
LL++I L +PL L + S L SP + SF S + S D++T P
Sbjct: 38 LLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTATVP 97
Query: 71 ALAASMHIANTTR 33
A+ +A TTR
Sbjct: 98 TTTAAARVAATTR 110
>01_01_0179 +
1517379-1517721,1518092-1518376,1519462-1519699,
1519796-1519946,1520049-1520446,1520552-1520573
Length = 478
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +1
Query: 73 GVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIENVVNNLIIDKRRN 252
G EL D + DL +L + AV++ QG + N V L+ + RN
Sbjct: 120 GKNELLTDKKSVDLVTISLQGVLENGQEIAVKKLSLESRQGVREFL-NEVRLLLKVQHRN 178
Query: 253 TWSTATSCGSATAQEIVTKYFP 318
S C S+ + +V YFP
Sbjct: 179 LVSLLGCCASSGHKMLVYPYFP 200
>03_05_0975 +
29333960-29334171,29336442-29336523,29336663-29336695,
29336803-29336923,29337398-29337577,29337578-29337670,
29338459-29338566,29338654-29338830,29338937-29338992,
29339071-29339155,29339994-29340535
Length = 562
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 293 CAVADPQLVAVLHVFRLLSMIRLLTTFSMMEP 198
C VAD L+ LHVF L+++ L+ F + P
Sbjct: 148 CHVADIVLIVRLHVFTHLNILNLVICFHLRFP 179
>04_01_0613 -
8042568-8042686,8043107-8043206,8043550-8043594,
8043691-8043770,8045082-8046322,8047077-8047507
Length = 671
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = +1
Query: 31 LLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 210
+LV + S ++ + A ++ ++ EKLYN + + + Y GK I
Sbjct: 196 MLVSDTLIDAQVSCALMNMYASCADMEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIA 255
Query: 211 ENVVNNL 231
++ N +
Sbjct: 256 HSIFNGM 262
>02_01_0590 +
4376785-4377009,4378153-4378407,4378514-4378641,
4378738-4378779,4378875-4378956,4379035-4379103,
4379180-4379350,4379430-4379495,4379777-4379845,
4379928-4380056,4380845-4380881,4380906-4380997,
4381541-4381602,4381855-4381918
Length = 496
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 70 AGVVELSADTSNQDLEEKLYNSILTGDYDSAVR----QSLEYESQGKGSIIENVVNNLII 237
+G+ L ++ +D +E L ++I G + V + LE + + ++E + + I
Sbjct: 417 SGLHTLEQVSNCKDFDEYLKSAIQKGRFKVTVEGAEVEKLEVATPREKELLERIASLERI 476
Query: 238 DKRRNTWSTAT 270
DKR N TAT
Sbjct: 477 DKRSNVMPTAT 487
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 44 LRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVR 172
L CAC+PP R + + + R +AS T L VR
Sbjct: 18 LSCACAPPTRGTRRRRLAVAVRVRVRVRASASEAMATEKLGVR 60
>01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625
Length = 525
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/69 (20%), Positives = 32/69 (46%)
Frame = +1
Query: 115 EEKLYNSILTGDYDSAVRQSLEYESQGKGSIIENVVNNLIIDKRRNTWSTATSCGSATAQ 294
E+ ++ + D D+ + ++G+G +++ + + + R T + T CG +
Sbjct: 313 EKNVFEPLAEPDLDALLPAGFMEATRGRGLVVKLWAPQVEVLRHRATGAFVTHCGWNSTL 372
Query: 295 EIVTKYFPL 321
E +T PL
Sbjct: 373 EGITAGLPL 381
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 115 EEKLY-----NSILTGDYDSAVRQSLEYESQGKGSIIENVVNNLIID 240
EEKLY NS + YD +Q + ES+GK I+ + + D
Sbjct: 407 EEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILVDFTRATVKD 453
>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
5478055-5478132,5478227-5478280,5478466-5478650,
5478781-5480374,5480506-5480700,5480753-5480904,
5481213-5481486,5481597-5481733,5482219-5482258,
5482773-5483261,5483605-5484168
Length = 1477
Score = 23.8 bits (49), Expect(2) = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 133 SILTGDYDSAVRQSLEYESQG 195
S L D DS +R + +YES+G
Sbjct: 1265 SNLASDEDSHIRHTNDYESEG 1285
Score = 21.0 bits (42), Expect(2) = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 184 ESQGKGSIIENVVNNLIIDKRRNTWSTATS 273
E+QG+GS+ E++ + +D + N TS
Sbjct: 1319 ENQGQGSLEEDMCHMAGLDTQSNLLHQDTS 1348
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 71 RASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARA 202
R SL++ R +L + R +C T +SP + + + + +RA
Sbjct: 134 RDSLDHKRNVLFRRDRDDCQTLTSPQASITFNDSSLTLTGPSRA 177
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 288 RCRPTACSSTPCVPSLVNDQVVN 220
RC P+ S PC P L D +V+
Sbjct: 123 RCHPSVRYSIPCTPPLFTDLLVD 145
>01_06_1747 + 39627938-39628441
Length = 167
Score = 26.2 bits (55), Expect = 6.6
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +2
Query: 38 LYLRCACS-PPARASLNYPRTL---LTKTSRRNCTTASSPATTTVLSVRAWNMRAKARA 202
L L AC P R+ + +PR L R T+ PA + RAW A ARA
Sbjct: 8 LLLAAACQFTPFRSVVTHPRARRRRLPGGGMRRRATSRLPAPRSPAPRRAWEYSANARA 66
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 25.8 bits (54), Expect = 8.7
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 50 CACSPPARASLNYPRTLLTKTSRRNCTTAS-SPATTTVLSVRAW 178
CACSPP + + T +T T+ TTAS +P TT+ V AW
Sbjct: 46 CACSPP---TTTHTTTTVTTTT----TTASPAPVTTSPADV-AW 81
>06_02_0243 - 13433276-13434154,13434192-13434593,13434730-13434750
Length = 433
Score = 25.8 bits (54), Expect = 8.7
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -2
Query: 260 LHVFRLLSMIRLLTTFSMMEPLPWLSYSKL*RTALS*SPVRMLLYS-FSSRSWLEVSADS 84
L FR+ + R ++ PLP + S +ALS P LL++ F+ +
Sbjct: 108 LFSFRIANAARCSSSLDFDHPLPSDAASSDHISALSIQPAACLLFARFAKNDETTATKTK 167
Query: 83 STTPALAASMHIANTTRS 30
+ T A AS H+ N +RS
Sbjct: 168 TKTKAKHASDHM-NISRS 184
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = +2
Query: 47 RCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 205
RCAC ARA P T L T T + A + A + AP
Sbjct: 209 RCACGAQARAGDLIPNTTLRTTIANLLATTTGAAASASSGTDKTRSSAGSNAP 261
>02_05_0499 - 29534462-29535315,29535871-29537221
Length = 734
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 74 ASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNM 184
ASL+ LL KT+ + ++ AT + VR WNM
Sbjct: 263 ASLDLSTILLGKTAYFGFSASTGAATYQLNCVRMWNM 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,723
Number of Sequences: 37544
Number of extensions: 183500
Number of successful extensions: 614
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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