BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbS20045X (339 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 30 0.55 SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 29 1.3 SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7 SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 28 2.2 SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 2.9 SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9 SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1 SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06) 26 6.8 SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8 SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 26 6.8 SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) 26 9.0 SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 26 9.0 SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0 SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) 26 9.0 SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 26 9.0 SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 26 9.0 SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0 >SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) Length = 937 Score = 29.9 bits (64), Expect = 0.55 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 312 VLCNNFLCRCRPTACSSTPC 253 V+C+ F+C+CR + C T C Sbjct: 765 VVCHRFICQCRMSLCCVTTC 784 >SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) Length = 672 Score = 28.7 bits (61), Expect = 1.3 Identities = 17/76 (22%), Positives = 31/76 (40%) Frame = -1 Query: 258 PCVPSLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVAGEDAVVQFLLEVLVRSVRG*FN 79 PC L+N + +N L DG L F + ++G+ V+ + R Sbjct: 446 PCAAGLLNRKHLNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPHDNTRLYEAHIQ 505 Query: 78 DARAGGEHAHRKYNEK 31 ++ HAH+++ K Sbjct: 506 ESMLEYNHAHKEFRRK 521 >SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 250 Score = 28.3 bits (60), Expect = 1.7 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -2 Query: 224 LTTFSMMEPLPWLSYSKL*RTALS*SPVRMLLYSFSSRSWLEVSA 90 + F ++PL L+YS+ RTA+ P ++ + R+W E A Sbjct: 185 VVNFEPLKPLFMLAYSRS-RTAIPAGPALPNIFGYPHRNWKEAGA 228 >SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) Length = 1514 Score = 27.9 bits (59), Expect = 2.2 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +2 Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKAR 199 +PP+R S R+ SR T S+P T + S RA + R KA+ Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRA-SSRGKAK 1404 >SB_23517| Best HMM Match : WD40 (HMM E-Value=0) Length = 860 Score = 27.5 bits (58), Expect = 2.9 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Frame = +2 Query: 110 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 205 TSR NC + P +T ++S +R W+ R++++ P Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692 >SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 851 Score = 27.1 bits (57), Expect = 3.9 Identities = 8/24 (33%), Positives = 18/24 (75%) Frame = +1 Query: 223 NNLIIDKRRNTWSTATSCGSATAQ 294 NN++++K+R W+ + G++TA+ Sbjct: 813 NNVVVEKKRMRWTRSKEDGNSTAE 836 >SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 616 Score = 26.6 bits (56), Expect = 5.1 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Frame = -1 Query: 306 CNNFLCR---CRPTACSSTPCVPSL 241 C LC+ C PT C T CVP+L Sbjct: 359 CVPTLCKHTICVPTLCEHTACVPTL 383 Score = 25.8 bits (54), Expect = 9.0 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 Query: 285 CRPTACSSTPCVPSL 241 C PT C T CVP+L Sbjct: 339 CLPTLCEHTVCVPTL 353 Score = 25.8 bits (54), Expect = 9.0 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = -1 Query: 285 CRPTACSSTPCVPSL 241 C PT C T CVP+L Sbjct: 349 CVPTLCEHTACVPTL 363 Score = 25.8 bits (54), Expect = 9.0 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%) Frame = -1 Query: 309 LCNNFLCR---CRPTACSSTPCVPSL 241 +C LC C PT C T CVP+L Sbjct: 368 ICVPTLCEHTACVPTLCKHTICVPTL 393 >SB_51512| Best HMM Match : Abhydro_lipase (HMM E-Value=9.8e-06) Length = 226 Score = 26.2 bits (55), Expect = 6.8 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +3 Query: 258 EYCYKLWVGNGTGNCYKVLPIKL 326 + C+ +W+GN GN Y +KL Sbjct: 49 DQCFDVWLGNVRGNTYGKRHVKL 71 >SB_53067| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 668 Score = 26.2 bits (55), Expect = 6.8 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +3 Query: 258 EYCYKLWVGNGTGNCYKVLPIKL 326 + C+ +W+GN GN Y +KL Sbjct: 372 DQCFDVWLGNVRGNTYGKRHVKL 394 >SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) Length = 1023 Score = 26.2 bits (55), Expect = 6.8 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +3 Query: 225 QPDH*QETEHMEYCYKLWVGNG 290 +P H T ++Y Y+LW G G Sbjct: 753 RPRHPSSTSTVKYRYRLWTGKG 774 >SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) Length = 353 Score = 25.8 bits (54), Expect = 9.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTV 160 +P A + RT +S RNCTT + +TTTV Sbjct: 124 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 156 >SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) Length = 328 Score = 25.8 bits (54), Expect = 9.0 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = -1 Query: 312 VLCNNFLCRCRPTACSSTPCVPSLV 238 V C +C C P C+ C P +V Sbjct: 228 VTCRCSVCTCCPCDCTCLQCAPCIV 252 >SB_8246| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 267 Score = 25.8 bits (54), Expect = 9.0 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 Query: 10 KAPNKMKLLVVFAMCMLAASAGVVELSADTSN 105 +AP K+ V A CM A+A V SADT+N Sbjct: 44 QAP-KVLAAVSSASCMWTANAATVSPSADTAN 74 >SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) Length = 398 Score = 25.8 bits (54), Expect = 9.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 59 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTV 160 +P A + RT +S RNCTT + +TTTV Sbjct: 169 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 201 >SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) Length = 1122 Score = 25.8 bits (54), Expect = 9.0 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +2 Query: 32 FSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPAT 151 + L+ R PP+ S + TLLT R NC T + P T Sbjct: 256 YQLFSRPPLLPPS--SEPFDITLLTILLRNNCPTLTEPVT 293 >SB_8486| Best HMM Match : Granulin (HMM E-Value=0) Length = 878 Score = 25.8 bits (54), Expect = 9.0 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%) Frame = -3 Query: 196 CLGSHIPSSDGQHCRSRR*G--CCCTV 122 C GSH+ DG C +R G CC + Sbjct: 551 CEGSHLACPDGTTCCKKRSGGYACCPI 577 >SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 25.8 bits (54), Expect = 9.0 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 116 SRSWLEVSADSSTTPALAASM 54 + SW+E A+ T PAL AS+ Sbjct: 242 ANSWIESDANQPTKPALTASL 262 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,689,587 Number of Sequences: 59808 Number of extensions: 204783 Number of successful extensions: 659 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 658 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 485763447 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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