Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20045X
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical ...    33   0.069
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical pr...    26   7.9  
U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>AL110498-7|CAB57909.2|  302|Caenorhabditis elegans Hypothetical
           protein Y64G10A.1 protein.
          Length = 302

 Score = 32.7 bits (71), Expect = 0.069
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 50  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNMRAKARAP 205
           CA +  A ++LNY RT L+    +NC     P TT + +  A N    + AP
Sbjct: 38  CATTCGACSNLNYTRTCLSD-GLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical protein
            T16G12.1 protein.
          Length = 1890

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 103  NQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIENVVNN 228
            N DL++ +  SIL+GDY  ++  S+         +   +++N
Sbjct: 1764 NLDLQKTMLRSILSGDYPPSLLNSIAVHDDSSDVLYNFLLDN 1805


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  CACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWN 181
           CA +  A ++LNY RT L+    +NC    S   T     +A N
Sbjct: 38  CATTCGACSNLNYTRTCLS-DGLKNCPCVGSTTITQPCGTQACN 80


>Z71177-4|CAA94870.1|  529|Caenorhabditis elegans Hypothetical
           protein AC3.7 protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 100 SNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIENVVNNLIIDKRRNTWSTATSCG 279
           S+     K+ +++  GD++  + Q+  YE  GK  + +N  N  I+D   +     ++  
Sbjct: 29  SHMKFMNKVADTLANGDHNVTILQTYNYEHFGKIRMAKN-TNVEILDYHLDESKAVSNEN 87

Query: 280 SATA 291
           SA+A
Sbjct: 88  SASA 91


>U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical
           protein C18B2.6 protein.
          Length = 599

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 50  CACSPPARASLNYPRTLLTKTSRRNC 127
           C CSP A  +  YP  L T T   +C
Sbjct: 384 CQCSPAAAQNPAYPDKLCTATQLYHC 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,765,460
Number of Sequences: 27780
Number of extensions: 148869
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)