Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20044
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0463 + 3502708-3503535 34 0.074
11_06_0289 - 21969248-21973516 33 0.17
11_06_0185 + 21018045-21022307 33 0.17
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 2.1
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 29 2.8
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 3.7
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 28 4.9
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 28 6.5
05_01_0155 + 1043045-1043240,1043325-1043401,1043963-1044092,104... 28 6.5
05_01_0242 + 1804183-1806096 27 8.5
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 27 8.5
>07_01_0463 + 3502708-3503535
Length = 275
Score = 34.3 bits (75), Expect = 0.074
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +2
Query: 323 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAE-V 493
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG K++ +E++ A+ +
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG-GKSKNAIEEKPAQTL 238
Query: 494 YKAIE 508
K IE
Sbjct: 239 EKGIE 243
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 356 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 505
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 356 EALDAKMETHE--EKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI 505
+A + ++TH+ E + I +L RLKDH+E EKT+ EQ E A+
Sbjct: 385 QAKNKAVDTHKLPEWNDNLIEKLAMRLKDHMEADEKTKKLNEQTGVEEETAV 436
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 292 QDRGGVPHPQRADE*LHRRHQGGARRQDGDPRGKTRGLHQRAALPSQG 435
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAEDD--KRDEGDGERDAREDKERREGDSQG 77
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 159 PVPRRADSPE-KTPSVEEIQEKLKAXEERRRSLKL 260
P PR ++ KTP + E++E +++ +ER ++L+L
Sbjct: 143 PAPRVSEEDATKTPEIFELREMVRSLQEREKTLEL 177
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 317 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 451
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/53 (24%), Positives = 31/53 (58%)
Frame = +2
Query: 353 KEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEI 511
KEA A++ EE+++ + E L++ + +E ++ + TAEV++ +++
Sbjct: 259 KEAEKAEVLKEEERKDMTLEEYEKVLEEKRKALEDSKSEGRKVTAEVFEGMQL 311
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 588 CSSCFAQTLDHLLEVLVTLVGSCGHLISMALYTSAVC 478
CSS + L L+E L+ SC HL + L++ +C
Sbjct: 799 CSSTPLKYLQRLIEAFSDLLESCPHLEFILLWSQELC 835
>05_01_0155 +
1043045-1043240,1043325-1043401,1043963-1044092,
1044376-1044473,1045622-1045729,1045748-1045800,
1046876-1047080
Length = 288
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 368 AKMETHEEKREAYINELRS--RLKDHLEGVEKTRLTLEQQTAE 490
A+ E++ K + N S L++H++ +EKT +T Q++ E
Sbjct: 83 AEAESYASKEQVRYNRFLSPRALREHIKNIEKTAVTALQESPE 125
>05_01_0242 + 1804183-1806096
Length = 637
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 500 PCTLPRSAVPGSTWSSQRPQDDP*DGSAAR 411
P T R+ +P ++RP+ DP G +AR
Sbjct: 23 PATSHRNKIPADPSRTERPRPDPGSGDSAR 52
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 332 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDH 439
N+ I EALD ++TH E + + S LKDH
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,491,657
Number of Sequences: 37544
Number of extensions: 224891
Number of successful extensions: 943
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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