Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20044
(595 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT001751-1|AAN71506.1| 257|Drosophila melanogaster RH02809p pro... 83 2e-16
AF202989-1|AAG35632.1| 174|Drosophila melanogaster STATHMIN-13 ... 83 2e-16
AF202774-1|AAG35628.1| 257|Drosophila melanogaster stathmin-14 ... 83 2e-16
AF202773-1|AAG35627.1| 234|Drosophila melanogaster stathmin-1 p... 83 2e-16
AE014134-1052|AAN10580.1| 257|Drosophila melanogaster CG31641-P... 83 2e-16
AY061071-1|AAL28619.1| 250|Drosophila melanogaster LD04103p pro... 79 4e-15
AF202990-1|AAG35633.1| 254|Drosophila melanogaster STATHMIN-19 ... 79 4e-15
AE014134-1054|AAF52345.2| 250|Drosophila melanogaster CG31641-P... 79 4e-15
AE014134-1053|AAN10581.1| 302|Drosophila melanogaster CG31641-P... 79 4e-15
AY058638-1|AAL13867.1| 492|Drosophila melanogaster LD33732p pro... 30 2.1
AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p pro... 30 2.1
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,... 30 2.1
AE014296-325|AAZ66051.1| 849|Drosophila melanogaster CG7971-PD,... 30 2.1
AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,... 30 2.1
AY051441-1|AAK92865.1| 513|Drosophila melanogaster GH11294p pro... 29 4.8
AE013599-1856|AAF58272.1| 513|Drosophila melanogaster CG8503-PA... 29 4.8
AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p pro... 29 6.3
AY129439-1|AAM76181.1| 751|Drosophila melanogaster LD08185p pro... 29 6.3
AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p pro... 29 6.3
AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog... 29 6.3
AE014297-1879|AAF55082.2| 2002|Drosophila melanogaster CG3389-PA... 29 6.3
AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-P... 29 6.3
AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-P... 29 6.3
AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA... 29 6.3
>BT001751-1|AAN71506.1| 257|Drosophila melanogaster RH02809p
protein.
Length = 257
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEERR 245
V+T++TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EERR
Sbjct: 6 VDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERR 65
Query: 246 RSLK 257
SL+
Sbjct: 66 ISLE 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 87 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 146
Query: 488 EVYKAIE 508
KAIE
Sbjct: 147 NEQKAIE 153
>AF202989-1|AAG35632.1| 174|Drosophila melanogaster STATHMIN-13
protein.
Length = 174
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEERR 245
V+T++TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EERR
Sbjct: 6 VDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERR 65
Query: 246 RSLK 257
SL+
Sbjct: 66 ISLE 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 87 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 146
Query: 488 EVYKAIE 508
KAIE
Sbjct: 147 NEQKAIE 153
>AF202774-1|AAG35628.1| 257|Drosophila melanogaster stathmin-14
protein.
Length = 257
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEERR 245
V+T++TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EERR
Sbjct: 6 VDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERR 65
Query: 246 RSLK 257
SL+
Sbjct: 66 ISLE 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 87 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 146
Query: 488 EVYKAIE 508
KAIE
Sbjct: 147 NEQKAIE 153
>AF202773-1|AAG35627.1| 234|Drosophila melanogaster stathmin-1
protein.
Length = 234
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEERR 245
V+T++TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EERR
Sbjct: 6 VDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERR 65
Query: 246 RSLK 257
SL+
Sbjct: 66 ISLE 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 87 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 146
Query: 488 EVYKAIE 508
KAIE
Sbjct: 147 NEQKAIE 153
>AE014134-1052|AAN10580.1| 257|Drosophila melanogaster CG31641-PC,
isoform C protein.
Length = 257
Score = 83.4 bits (197), Expect = 2e-16
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +3
Query: 69 VETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEERR 245
V+T++TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EERR
Sbjct: 6 VDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEERR 65
Query: 246 RSLK 257
SL+
Sbjct: 66 ISLE 69
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 87 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 146
Query: 488 EVYKAIE 508
KAIE
Sbjct: 147 NEQKAIE 153
>AY061071-1|AAL28619.1| 250|Drosophila melanogaster LD04103p
protein.
Length = 250
Score = 79.0 bits (186), Expect = 4e-15
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 EVETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEER 242
+V+ +TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EER
Sbjct: 50 KVKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEER 109
Query: 243 RRSLK 257
R SL+
Sbjct: 110 RISLE 114
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 132 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 191
Query: 488 EVYKAIE 508
KAIE
Sbjct: 192 NEQKAIE 198
>AF202990-1|AAG35633.1| 254|Drosophila melanogaster STATHMIN-19
protein.
Length = 254
Score = 79.0 bits (186), Expect = 4e-15
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 EVETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEER 242
+V+ +TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EER
Sbjct: 2 KVKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEER 61
Query: 243 RRSLK 257
R SL+
Sbjct: 62 RISLE 66
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 84 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 143
Query: 488 EVYKAIE 508
KAIE
Sbjct: 144 NEQKAIE 150
>AE014134-1054|AAF52345.2| 250|Drosophila melanogaster CG31641-PA,
isoform A protein.
Length = 250
Score = 79.0 bits (186), Expect = 4e-15
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 EVETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEER 242
+V+ +TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EER
Sbjct: 50 KVKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEER 109
Query: 243 RRSLK 257
R SL+
Sbjct: 110 RISLE 114
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 132 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 191
Query: 488 EVYKAIE 508
KAIE
Sbjct: 192 NEQKAIE 198
>AE014134-1053|AAN10581.1| 302|Drosophila melanogaster CG31641-PB,
isoform B protein.
Length = 302
Score = 79.0 bits (186), Expect = 4e-15
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +3
Query: 66 EVETKSTEIRCQEMSKGGLAYEVILAEPV-GVPVPRRADSPEKTPSVEEIQEKLKAXEER 242
+V+ +TEIRCQE S+GGL+YEVILAEP V VP+R +P K SVEEI++KLKA EER
Sbjct: 50 KVKFITTEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVSVEEIEQKLKAAEER 109
Query: 243 RRSLK 257
R SL+
Sbjct: 110 RISLE 114
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/67 (55%), Positives = 48/67 (71%)
Frame = +2
Query: 308 SRIRSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTA 487
+R + E TN FI TKE L++KME H EKREA I++++ +LK H + +EKTR TLEQQ A
Sbjct: 132 TRKKDEITNEFITQTKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKA 191
Query: 488 EVYKAIE 508
KAIE
Sbjct: 192 NEQKAIE 198
>AY058638-1|AAL13867.1| 492|Drosophila melanogaster LD33732p
protein.
Length = 492
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 PVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRRSLK 257
P P PR+ KTP ++E+++++ +E R S+K
Sbjct: 389 PSPKPTPRKQKKRSKTPELKEVKKEISPRKESRVSVK 425
>AY052127-1|AAK93551.1| 1062|Drosophila melanogaster SD07741p
protein.
Length = 1062
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 PVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRRSLK 257
P P PR+ KTP ++E+++++ +E R S+K
Sbjct: 746 PSPKPTPRKQKKRSKTPELKEVKKEISPRKESRVSVK 782
>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
isoform A protein.
Length = 1062
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 PVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRRSLK 257
P P PR+ KTP ++E+++++ +E R S+K
Sbjct: 746 PSPKPTPRKQKKRSKTPELKEVKKEISPRKESRVSVK 782
>AE014296-325|AAZ66051.1| 849|Drosophila melanogaster CG7971-PD,
isoform D protein.
Length = 849
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 PVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRRSLK 257
P P PR+ KTP ++E+++++ +E R S+K
Sbjct: 746 PSPKPTPRKQKKRSKTPELKEVKKEISPRKESRVSVK 782
>AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,
isoform C protein.
Length = 1107
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 147 PVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRRSLK 257
P P PR+ KTP ++E+++++ +E R S+K
Sbjct: 746 PSPKPTPRKQKKRSKTPELKEVKKEISPRKESRVSVK 782
>AY051441-1|AAK92865.1| 513|Drosophila melanogaster GH11294p
protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 24 QLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGL 122
+LF+ C V+ E++T + I+C++ GGL
Sbjct: 292 KLFKCACERCVDVTELDTNYSAIKCEDRQCGGL 324
>AE013599-1856|AAF58272.1| 513|Drosophila melanogaster CG8503-PA
protein.
Length = 513
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 24 QLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGL 122
+LF+ C V+ E++T + I+C++ GGL
Sbjct: 292 KLFKCACERCVDVTELDTNYSAIKCEDRQCGGL 324
>AY129442-1|AAM76184.1| 1124|Drosophila melanogaster LD16566p
protein.
Length = 1124
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 377 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEI 511
ET E +R+ I +++++L+D + +EK + + EQ+ ++ K +EI
Sbjct: 851 ETKEPERQKTITDIQTKLRDIEKLIEKIKASFEQK-IDLDKLLEI 894
>AY129439-1|AAM76181.1| 751|Drosophila melanogaster LD08185p
protein.
Length = 751
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 377 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEI 511
ET E +R+ I +++++L+D + +EK + + EQ+ ++ K +EI
Sbjct: 478 ETKEPERQKTITDIQTKLRDIEKLIEKIKASFEQK-IDLDKLLEI 521
>AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p
protein.
Length = 895
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 75 TKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRR 248
++ T+I E L + E + +P S E T S+EEI LKA E+++R
Sbjct: 599 SEETDIASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQR 656
>AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog
PMS2 protein.
Length = 893
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 75 TKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRR 248
++ T+I E L + E + +P S E T S+EEI LKA E+++R
Sbjct: 597 SEETDIASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQR 654
>AE014297-1879|AAF55082.2| 2002|Drosophila melanogaster CG3389-PA
protein.
Length = 2002
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 356 EALDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEV 493
EA DA + + E+R L + LE V K L+Q+T EV
Sbjct: 1649 EATDADEGDNGRIGYYQVGEIRQTLSEGLENVRKAPFLLDQETGEV 1694
>AE014296-2184|AAF49884.1| 1087|Drosophila melanogaster CG10971-PB,
isoform B protein.
Length = 1087
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 377 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEI 511
ET E +R+ I +++++L+D + +EK + + EQ+ ++ K +EI
Sbjct: 814 ETKEPERQKTITDIQTKLRDIEKLIEKIKASFEQK-IDLDKLLEI 857
>AE014296-2183|AAF49885.2| 1124|Drosophila melanogaster CG10971-PA,
isoform A protein.
Length = 1124
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +2
Query: 377 ETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEI 511
ET E +R+ I +++++L+D + +EK + + EQ+ ++ K +EI
Sbjct: 851 ETKEPERQKTITDIQTKLRDIEKLIEKIKASFEQK-IDLDKLLEI 894
>AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA
protein.
Length = 899
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 75 TKSTEIRCQEMSKGGLAYEVILAEPVGVPVPRRADSPEKTPSVEEIQEKLKAXEERRR 248
++ T+I E L + E + +P S E T S+EEI LKA E+++R
Sbjct: 603 SEETDIASDEDDHIELPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQR 660
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,164,728
Number of Sequences: 53049
Number of extensions: 354434
Number of successful extensions: 1841
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -