Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.88 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    24   0.88 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.5  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.5  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   1.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   3.5  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.2  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   8.2  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQR 377
           LP DS   L L V +  S  V LN++A++
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEK 263


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQR 377
           LP DS   L L V +  S  V LN++A++
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEK 263


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 68  MLQIPTSLTTFWRSSFTIASSSPITTVRLKRA 163
           +L IPT   T  +SSF+I+S  P T +   ++
Sbjct: 8   ILVIPTMARTPLKSSFSISSILPETALEAPKS 39


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 286 SSGDCFPVEFRLIFAENAIKLMYK 357
           S+   FP+++ L+F+E  + L++K
Sbjct: 696 SAAGFFPIDYSLVFSETKL-LLFK 718


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 380 LSNDVQGDDGRPAYGDGKDKTSPRV 454
           LS+D   ++ +   G+ KDK  P++
Sbjct: 223 LSDDEAEEEKKEEEGEDKDKDKPKI 247


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 56  WHLCMLQIPTSLTTFWRSS 112
           +H+ M  +PT L +F++S+
Sbjct: 59  YHIFMHIVPTKLISFYKST 77


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 260 LIAYSMQFILLFRISLFTTFVMTSLFF 180
           L   S+ F   F+I +    ++T LFF
Sbjct: 73  LFCASLSFYKAFKIGILLNQLITPLFF 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,759
Number of Sequences: 336
Number of extensions: 2182
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)