Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20043
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.40
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.6
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 2.8
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 26 3.7
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 3.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.7
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 6.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 25 6.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.6
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.40
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +2
Query: 77 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTL 256
+ TSL++ SS +SSS + L +S+ + S S T ++ + S+
Sbjct: 10 VDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSS 69
Query: 257 STLAPGLQGHRPVIVSQLSSDLSSPKTRLSLCTSATVS 370
S +P +VS S SS L+ +SAT++
Sbjct: 70 SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLT 107
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 109 QLYNSVVVADYDSAVEKSKHLYEEKKS 189
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 299 VSQLSSDLSSPKTRLSLCTSATV 367
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 350 ISLIAFSAKISLNSTGKQSPDDVLGALEPKLIAYSMQFILLFRISLFTTFVMTSLFFSSY 171
I LI FS S+ + + + +L + + AYS F L LF+ + S S+
Sbjct: 517 IKLILFSKSFSVLQSTSEKIEQLLVSFQRNPSAYSKSFTLALAEWLFSRRLFQSALLYSF 576
Query: 170 K 168
K
Sbjct: 577 K 577
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 485 NKVYFKILTLNVTNTWYWESALTGTATIWXF 577
N YF I T ++ N YW + + G+A F
Sbjct: 299 NLAYFNIRTRSLNNLLYWFAQIMGSAVAALF 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.7
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +2
Query: 77 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTL 256
IP+S T SS I SSSP+ + + S+ +S + + TA S+
Sbjct: 671 IPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNIT-HSSLSLTAMSSS 729
Query: 257 STLAPGLQGHRPVIVSQLSSDLSSPKTRLSLCTSATVS 370
S + + + S ++ LSS + ++ +S TVS
Sbjct: 730 SAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVS 767
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +1
Query: 430 QGQDKPESQLEVNRSVGEQQGLLQDLDTERNQYLVLGVGTNW 555
+G KP + +++++ + G L+D E N L G+ W
Sbjct: 108 EGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGW 149
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 330 GEDKSELNWETITGRCPW 277
G+D WE +TGRC W
Sbjct: 398 GDDGVLRIWEVMTGRCVW 415
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 23/101 (22%), Positives = 46/101 (45%)
Frame = +2
Query: 77 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTL 256
+P + T S++TI+SS+P+T+ + + T +S + TT T +++
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSV 561
Query: 257 STLAPGLQGHRPVIVSQLSSDLSSPKTRLSLCTSATVSL*T 379
+ + I S S+ ++S + CT++T L T
Sbjct: 562 PYTSTPVTSSNYTISS--STPVTSTPVTTTNCTTSTSVLYT 600
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,565
Number of Sequences: 5004
Number of extensions: 39985
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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