Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    29   3.8  
12_01_0378 - 2946916-2947590                                           28   5.1  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    28   6.7  
03_06_0460 - 34098115-34098622,34098981-34099355,34100939-341011...    27   8.9  

>08_01_0410 +
           3661304-3661383,3661494-3661673,3661757-3661870,
           3661975-3662133,3662193-3662243,3662838-3663018,
           3663102-3663228,3663322-3663431,3663529-3663667,
           3663767-3663876,3664002-3664071,3664247-3664320,
           3664458-3664553,3664682-3664777,3665041-3665168,
           3665422-3665656,3665743-3665910,3666274-3666381,
           3666468-3666617,3666905-3667015,3667118-3667297,
           3667427-3667555,3667819-3667914,3668108-3668293,
           3668431-3668603,3668720-3668921
          Length = 1150

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 288 RCPWSPGAKVDSVLHAVHLVVSYQFV 211
           RC WSP   +  V  + H+V +Y FV
Sbjct: 430 RCLWSPDGSILGVAFSKHIVQTYAFV 455


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +1

Query: 4   GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 144
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


>01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,
            3345039-3345101,3345582-3345769,3345846-3346029,
            3346535-3346606,3346676-3346787,3346878-3346953,
            3347050-3347100,3347179-3347260,3347331-3347567,
            3347650-3347772,3348141-3348326,3348680-3349625,
            3350426-3350551,3350683-3350811,3350918-3351049,
            3351167-3351301,3351450-3351575,3352080-3352148,
            3352149-3352205,3352302-3352436,3352600-3352704,
            3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +2

Query: 281  GHRPVIVSQLSSDLSSPKTRLSLCTSATVSL*TLSNDVQGDDGRPAYGDGKDKTSPR 451
            GHR  I   L  + +SP   + LC SA  S   L+N    DD      D  +  S R
Sbjct: 903  GHRSAIKKILEGN-ASPSLMMVLCISAIYSCPDLNNSKPEDDRAHTDDDNSENKSLR 958


>03_06_0460 -
           34098115-34098622,34098981-34099355,34100939-34101156,
           34101235-34101297
          Length = 387

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 92  LGTSESAAYRDATKRHRITIAGFIFGAS 9
           +G +++A+Y  +T R  + +AG + GAS
Sbjct: 284 VGAADAASYCGSTSRRMVQVAGEVLGAS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,758,015
Number of Sequences: 37544
Number of extensions: 267786
Number of successful extensions: 863
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)