Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    25   2.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   5.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   7.8  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 389 DVQGDDGRPAYGDGKDKTSPRV 454
           D  GD GRPAY    D +  +V
Sbjct: 101 DRNGDGGRPAYSGNSDPSMDQV 122


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 255 LPPDSGEKLTLGVTILLSLTVFLNLVAE 282


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 536 WESALTGTATIWXFG 580
           W S  TGTA IW  G
Sbjct: 45  WVSDSTGTAAIWASG 59


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,839
Number of Sequences: 2352
Number of extensions: 9860
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)