Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.1  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 246
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 136 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 246
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 425 DGKDKTSPRVSWKLIALWENNKVYFKILTLNVTNT 529
           D KD+ +P VS KL+AL + NK  FK  T    NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 425 DGKDKTSPRVSWKLIALWENNKVYFKILTLNVTNT 529
           D KD+ +P VS KL+AL + NK  FK  T    NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,396,472
Number of Sequences: 27780
Number of extensions: 225698
Number of successful extensions: 862
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)