Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 430 QGQDKPESQLEVNRSVGEQQGLLQDLDTERNQYLV 534
           Q  DK ++   + +   +QQ L+Q L   ++QYL+
Sbjct: 165 QTADKKKASAPLQQLALQQQRLIQQLQITQSQYLL 199


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 463 LPADSRACLVLAVAVGRSAIVALNIIAQ 380
           LP DS   L L V +  S  V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 177 GEEERSHHKCREQTDTKQQDELHGV 251
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  VPNDILEEQLYNSVVVADYDSAVEK 159
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  VPNDILEEQLYNSVVVADYDSAVEK 159
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 EEERSHHKCREQTDTKQQDELH 245
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 180 EEERSHHKCREQTDTKQQDELH 245
           +EER   K R+Q++ +    LH
Sbjct: 181 QEERQRTKERDQSEVESTSSLH 202


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 407 GRPAYGDGKDKTSPRVS 457
           G P  GDG  + SP+ S
Sbjct: 333 GTPGSGDGDTEISPQTS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,089
Number of Sequences: 438
Number of extensions: 2834
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)