Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20043
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.11 
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At1g27990.1 68414.m03428 expressed protein                             29   3.2  
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical...    28   4.2  
At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putati...    28   5.6  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    27   7.4  
At1g59077.1 68414.m06670 hypothetical protein                          27   7.4  
At1g58766.1 68414.m06659 hypothetical protein                          27   7.4  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   7.4  
At4g12900.1 68417.m02018 gamma interferon responsive lysosomal t...    27   9.8  
At2g37035.1 68415.m04543 expressed protein                             27   9.8  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   9.8  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 7   LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 186
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 187 SEVITNV 207
             +  N+
Sbjct: 214 GSIAPNL 220


>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
           domain
          Length = 537

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +2

Query: 173 TRRRRAKSSQMS*TN*YETTR*TAWSTLSTLAPGLQGHRPVIVSQLSSDLSSPKTRLSLC 352
           T+R+RAK +    T+ YE       S L  ++  L+  + V + QLS   S+P+T+LS  
Sbjct: 349 TKRKRAKDAIDRYTHFYERWAFNQSSRLKAMSD-LEKWQSVELKQLSDIQSTPETQLSFT 407

Query: 353 TSATVSL 373
             A + +
Sbjct: 408 VDAWLQI 414


>At1g27990.1 68414.m03428 expressed protein
          Length = 271

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +2

Query: 458 WKLIAL--WENNKVYFKILTLNVTN---TWYWESALTGTATIWXFGVN 586
           W++  +  W  +  + K L +N T    TW+W       A +  FGVN
Sbjct: 177 WRIFVIIGWSKDVWFNKSLPINATPNVVTWFWFGRYLALANLGYFGVN 224


>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
           UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
           [Arabidopsis thaliana]; contains Pfam 00415: Regulator
           of chromosome condensation (RCC1)
          Length = 440

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
 Frame = +2

Query: 329 PKTRLSLCTSATVSL*TLSNDV-----QGDDGRPAYGDGKDKTSP 448
           P+  L +   A+ S+  LS D+     +G+DG+  +GD +D+ SP
Sbjct: 14  PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSP 58


>At5g48010.1 68418.m05933 pentacyclic triterpene synthase, putative
           similar to pentacyclic triterpene synthase [gi:6650207]
           [PMID: 11247608] Contains Pfam domain PF00432:
           Prenyltransferase and squalene oxidase repeat
          Length = 758

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 157 KSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAINFGSRAPRTSSGDCFPVEFRLI 324
           KS H++ E  S +    +NKLIR   +      I++   + R  +G C P  F ++
Sbjct: 327 KSVHMFSE--SILDRWPLNKLIRQRALQSTMALIHYHDESTRYITGGCLPKAFHML 380


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 207
            LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 1581


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 207
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 100 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNV 207
           LEE   N VV +DY ++ +K  H+ E    +V I N+
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNI 517


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 53   SWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 148
            +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1086 TWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


>At4g12900.1 68417.m02018 gamma interferon responsive lysosomal
           thiol reductase family protein / GILT family protein
           similar to SP|P13284 Gamma-interferon inducible
           lysosomal thiol reductase precursor {Homo sapiens};
           contains Pfam profile PF03227: Gamma interferon
           inducible lysosomal thiol reductase (GILT)
          Length = 231

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 467 IALWENNKVYFKILTLNVTNTWYWESAL 550
           I  W N ++++K +    TNT  WES +
Sbjct: 107 IRTWPNQRLHYKFIRCVETNTNAWESCV 134


>At2g37035.1 68415.m04543 expressed protein
          Length = 433

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 473 LWENNKVYFKILTLNVTNTWYWESALTGTATIWXFG 580
           +W  +++ FK +T  V   W    ALT    +W FG
Sbjct: 273 VWRGSRLGFKRVTGFVLMRWAVRDALTQLLGLWYFG 308


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 117 VKLLLQNVVRDVGICSIQRCH 55
           +K  ++N+++  G+CSIQR H
Sbjct: 727 LKEAMRNILKTKGVCSIQRLH 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,854,421
Number of Sequences: 28952
Number of extensions: 215554
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)