Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.0  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         22   4.7  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 560 SRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSA 459
           S ++ P+V  +Q   P+R+ P++  R R   +SA
Sbjct: 65  SVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSA 98


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 560 SRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSA 459
           S ++ P+V  +Q   P+R+ P++  R R   +SA
Sbjct: 56  SVLQLPTVTEIQETQPQRTKPTAGKRARTAYTSA 89


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 359 WV*LISFMRHSRTGATLQTHCAQQLVQTPI*KWRRC 466
           W+    F+ H   G  L  H   QL+  P   + RC
Sbjct: 667 WLFHCHFLFHIVIGMNLIIHVGTQLIYRPFSHFPRC 702


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 541 DGFLTRDNLQERM 579
           DG+L  DNL ERM
Sbjct: 153 DGWLFGDNLSERM 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,354
Number of Sequences: 336
Number of extensions: 2654
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)