Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.1  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   2.8  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   4.9  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   8.6  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 433 ELLCAVRLQRSASAGMAHERYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAAL 266
           ELLC V  +++ S  +      LD        Q + +QQ  +++ L   + D AAL
Sbjct: 146 ELLCLVTRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAAL 201


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 LLDTARKDLAALNTIAKGCRNLFELRTF*ITYVLFNTIRYIR-CSN 167
           L DTAR  ++ +N I   C NL  L    I Y+    +R +  C N
Sbjct: 327 LTDTARIHVSVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRN 372


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 326 PATEGHGASIGHGE--EGPCRTQHHREGMSQ 240
           PA   +  S G GE  EG   TQHHR  + Q
Sbjct: 149 PALSQNSGSGGEGESDEGSFNTQHHRSPIFQ 179


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 328 SRTASRLLVHLGLIDIVHAPFPHWRYVANALRTA 429
           +RT ++ LV +GL+D    P+P  +  A A+  A
Sbjct: 353 TRTVAKYLVEIGLLDHKLLPYPPSQQCAAAMYLA 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,383
Number of Sequences: 5004
Number of extensions: 43510
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)