Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0450 - 25320310-25321224,25321317-25321751                       29   3.8  
01_06_1416 - 37174913-37175006,37175299-37175441,37175932-371760...    29   3.8  
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    28   5.1  
01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189           28   5.1  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   6.7  
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847...    27   8.9  

>04_04_0450 - 25320310-25321224,25321317-25321751
          Length = 449

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 409 ANALRTATRSNAHLKVEALLIVKRVRAVELGSLLFGTKSCTNTTD 543
           A  L T   SN+ +  +  L+  +V  +  G  +FGT+ C N  D
Sbjct: 122 AGELLTLPESNSAVVTDRPLLYVQVTRLRCGGFVFGTQICHNLVD 166


>01_06_1416 -
           37174913-37175006,37175299-37175441,37175932-37176027,
           37177125-37177364,37177456-37177812,37178020-37178097,
           37178387-37178434,37179406-37179675,37179954-37180054,
           37180452-37180605
          Length = 526

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 465 ANCEASSCSRARVASLRD*ELHQHDRRLLDARQSAGAYVAARAERRR 605
           + C   +C R +  +LR   LHQ  RR+L  RQ+A  +++     RR
Sbjct: 437 SGCVRYTCMRKKADNLRQQTLHQL-RRILTTRQAARCFLSIGEYYRR 482


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -3

Query: 572 SCRLSRVKKP-SVVLVQLL-VPKRSDPSST--ARTRFTISSASTFKWAFERVAVRSAFAT 405
           +CR  R+K P S  + Q+  +PK+S+PS +  +R+R T S  +  K        R  F+ 
Sbjct: 183 NCRAHRIKVPNSSGIAQIQRIPKKSEPSPSVVSRSRSTSSVTNVPKPTTRPATARHYFSV 242

Query: 404 *RQC 393
             +C
Sbjct: 243 TSEC 246


>01_01_0895 + 7052118-7053110,7053249-7053252,7054450-7055189
          Length = 578

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 401 RQCGNGA*TISIRPRCTRRREAVLDPATEGHGASIG-HGEEG 279
           R+CG G  T+++          V+  A  GHG + G  G+EG
Sbjct: 176 RRCGGGGETVNLSDLLMSYAHGVISRAAFGHGGAHGFDGDEG 217


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 344 REAVLDPATEGHGASIGHGEEGPCRTQHHREG 249
           R + LD   EG  A IG GE+ PC    H+ G
Sbjct: 274 RRSHLDLCIEGSPADIGLGEKLPCVRWEHKFG 305


>01_05_0592 -
           23483834-23484285,23484357-23484455,23484534-23484702,
           23485049-23485363,23485561-23485767,23485852-23486106,
           23486575-23486736
          Length = 552

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +1

Query: 274 QGPSSPCPIDAPCPSVAGSRTASRLLVHLGLIDIVHAPFPHWRYVANAL------RTATR 435
           QGP+ P P      + A + T  +L+ HLG ++   A     R +A         R A  
Sbjct: 305 QGPARPPPKRIHLRNEAKTATLEKLVGHLGTLEATRAQLHETRELARKTEHDLRDRIAEL 364

Query: 436 SNAHLKVEALLIVKRVRAVE 495
           S +    +   + KR++A+E
Sbjct: 365 SGSSKAAKITELEKRIKALE 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,607
Number of Sequences: 37544
Number of extensions: 310836
Number of successful extensions: 1052
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)