Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20042
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51) 61 6e-10
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3) 29 2.2
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39) 29 2.2
SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19) 29 3.9
SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52) 29 3.9
SB_1625| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_6152| Best HMM Match : rve (HMM E-Value=0.0036) 28 5.2
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08) 28 6.9
SB_8917| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_725| Best HMM Match : Apolipoprotein (HMM E-Value=0.51)
Length = 567
Score = 61.3 bits (142), Expect = 6e-10
Identities = 30/87 (34%), Positives = 49/87 (56%)
Frame = -1
Query: 508 EATRARLHELASQLAAPPLSNGRLNELLCAVRLQRSASAGMAHERYQLDPGAQEDVKQFL 329
E R + + +L AP RLNELL +RLQ+S + + +Y +DP ++++KQ L
Sbjct: 473 EQLRVHMESIQVELNAPLQFKARLNELLSQIRLQQSQARERSLGKYVMDPQLEDELKQHL 532
Query: 328 TLQQKGMAHLLDTARKDLAALNTIAKG 248
QQ G+ H++ + D+ L TI +G
Sbjct: 533 EQQQVGLMHIIGIIKDDIEDLKTIEQG 559
>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAALNT 260
++ L+P Q+DV + LTL++K D K+L LNT
Sbjct: 652 QHLLEPELQQDVTEKLTLERKKAKKHFDRGSKELPELNT 690
>SB_17622| Best HMM Match : zf-CCHC (HMM E-Value=0.3)
Length = 374
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 271 RQGPSSPCPIDAPCPSVAGSRTASRLLVHLGLIDIVHAPFPHWRYVANAL 420
+ P SP A C V G R + L+++ H PH + + A+
Sbjct: 187 KAAPPSPPEASATCTQVCGGEGTGRSCARIVLVNLTHESQPHKKQLTYAV 236
>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
Length = 1607
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 271 RQGPSSPCPIDAPCPSVAGSRTASRLLVHLGLIDIVHAPFPHWRYVANAL 420
+ P SP A C V G R + L+++ H PH + + A+
Sbjct: 658 KPAPPSPPEASATCTQVCGGEGTGRSCARIVLVNLTHESQPHKKQLTYAV 707
>SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19)
Length = 577
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAALN 263
++ L+P Q+DV + LTL++K D K+L LN
Sbjct: 524 QHLLEPELQQDVTEKLTLKRKKAKKHFDRGSKELPELN 561
>SB_47526| Best HMM Match : Churchill (HMM E-Value=0.52)
Length = 890
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTL---QQKGMAHLLDTARKDLAALNTIAKGCRNLFELRTF*ITY 206
R + P E V+Q +TL + K H+L+T ++++ L AK C ++ E T
Sbjct: 217 RAKNSPHKLETVQQEMTLLYIRAKNSPHILETDQQEMTLLYLRAKNCTHILE------TV 270
Query: 205 VLFNTIRYIRCSN 167
T+ YIR N
Sbjct: 271 QQEMTLLYIRAKN 283
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTL---QQKGMAHLLDTARKDLAALNTIAKGCRNLFELRTF*ITY 206
R + P E V+Q +TL + K H+L+T ++++ L AK C ++ E T
Sbjct: 427 RAKNSPHKLETVQQEMTLLYIRAKNSPHILETDQQEMTLLYLRAKNCTHILE------TV 480
Query: 205 VLFNTIRYIRCSN 167
T+ YIR N
Sbjct: 481 QQEMTLLYIRAKN 493
>SB_1625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAALN 263
++ L+P Q+DV + LTL++K D K+L LN
Sbjct: 965 QHLLEPELQQDVTEKLTLKRKKAKKHFDRGSKELPELN 1002
>SB_6152| Best HMM Match : rve (HMM E-Value=0.0036)
Length = 555
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 376 RYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAALN 263
++ L+P Q+DV + LTL+ K D K+L LN
Sbjct: 399 QHLLEPELQQDVTEKLTLKSKKAKKHFDRGSKELPELN 436
>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 240
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 231 SNKLRHPFAMVLSAARSFLAVSNRCAMPFCCRVKNCF 341
S+ L HP +V +LA N C+ C K CF
Sbjct: 80 SDHLEHPSDLVDKPGAVYLAAENACSSKPCDPPKKCF 116
>SB_8917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 346 LLVHLGLIDIVHAPFPHWRYV 408
LLV+L + DIV A F WRY+
Sbjct: 4 LLVNLAVADIVVAIFQAWRYI 24
>SB_52310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 346 LLVHLGLIDIVHAPFPHWRYV 408
LLV+L + DIV A F WRY+
Sbjct: 4 LLVNLAVADIVVAIFQAWRYI 24
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,436
Number of Sequences: 59808
Number of extensions: 345209
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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