Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    29   3.5  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    28   4.6  
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    28   4.6  
Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical p...    28   6.0  
U13070-12|AAK67222.1|  405|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.       27   8.0  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 326 PATEGHGASIGHGEEGPCRTQHHRE 252
           PA  GH  S GHG   P    HH E
Sbjct: 436 PAHHGHHESHGHGHHSPAHHGHHGE 460


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -1

Query: 346 DVKQFLTLQQKGMAHLLDTARKDLAALNT--IAKGCRNLFEL----RTF*ITYVLFNTIR 185
           D  Q + LQ      LL  AR DL+      ++    N+ ++    +TF       NTI+
Sbjct: 295 DETQEIELQTNRFKELLHDARLDLSVFKDRGVSDSLENVLDIISRIKTFRTFLSELNTIK 354

Query: 184 YIRCSNFST 158
           YI C N S+
Sbjct: 355 YIDCLNISS 363


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 276 LPHSTPSRRDVATCSNLELFKSRTSFSIQSDIF 178
           +PHS P   D  TCS+  +F + T  +IQSD F
Sbjct: 285 IPHSQPIPLD--TCSDQPIFPNSTHNAIQSDGF 315


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 511  FGTKSCTNTTDGFLTRDNLQERMSQRVQSGGEAR 612
            FG  S T TTDG   +  L    SQ++Q GG+ +
Sbjct: 983  FGDDSGTTTTDGAPAKRGLFSSDSQKLQFGGQQK 1016


>Z79754-13|CAB02101.1|  153|Caenorhabditis elegans Hypothetical
           protein F25H2.5 protein.
          Length = 153

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 352 VHLGLIDIVHAPFPHWRYVANALRTATRSNAHLKV 456
           VH GL+  + A F    Y   AL+  T S AHL+V
Sbjct: 16  VHRGLVGKIIARFEERGYKLVALKQMTASKAHLEV 50


>U13070-12|AAK67222.1|  405|Caenorhabditis elegans Hypothetical
           protein F01F1.11 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 388 MAHERYQLDPGAQEDVKQFLTLQQKGMAHLLDTARKDLAA 269
           M  E+Y     A+ED+K F T Q+    H ++   +++A+
Sbjct: 37  MGGEKYDSYNDAKEDIKDFKTTQRMKKIHRMEKIEQNIAS 76


>Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical
           protein F10B5.6 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 SSNKLRHPFAMVLSAARSFLAVSNRCAMPFC 320
           SS KLR   A++++ A SFL + NR A   C
Sbjct: 195 SSKKLRMVPALMITIAESFLKLMNRDAAMIC 225


>AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 228 SSNKLRHPFAMVLSAARSFLAVSNRCAMPFC 320
           SS KLR   A++++ A SFL + NR A   C
Sbjct: 195 SSKKLRMVPALMITIAESFLKLMNRDAAMIC 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,007,850
Number of Sequences: 27780
Number of extensions: 258078
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)