Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.44 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.44 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 569  CRLSRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSASTFKW 444
            C+ S +      LVQLLV +   P ++  T    S +   KW
Sbjct: 887  CQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKW 928


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 569  CRLSRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSASTFKW 444
            C+ S +      LVQLLV +   P ++  T    S +   KW
Sbjct: 883  CQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSINVKW 924


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 361 GLIDIVHAPFPHWRYVANALRTATRSNAHLKVEALLIV 474
           G +D+++A       +AN L  A+    H  +E  +I+
Sbjct: 417 GKVDVINAAKELIFQIANELEDASNIPVHATLEKFMIL 454


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 399 PVREWRMNDIN 367
           P   W MNDIN
Sbjct: 94  PYPNWEMNDIN 104


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 304 HLLDTARKDLAALN 263
           H+LDT  +D  ALN
Sbjct: 20  HILDTCGRDTYALN 33


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 304 HLLDTARKDLAALN 263
           H+LDT  +D  ALN
Sbjct: 110 HILDTCGRDTYALN 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,599
Number of Sequences: 438
Number of extensions: 2995
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)