Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20042
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28270.1 68415.m03431 DC1 domain-containing protein contains ...    31   0.80 
At5g41660.1 68418.m05061 hypothetical protein similar to unknown...    28   5.6  
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa...    28   5.6  
At5g66850.1 68418.m08428 protein kinase family protein contains ...    27   7.4  
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein...    27   7.4  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    27   7.4  
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    27   9.8  
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident...    27   9.8  

>At2g28270.1 68415.m03431 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 248

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = +3

Query: 450 ESGGAANCEASSCSRARVASLRD*ELHQHDRRL-----LDARQSAGAYVAARAERRR 605
           + GG    E+SS S +R+ SL + E    +  +     LDA  +AG+YV +   RR+
Sbjct: 189 KKGGEEEGESSSLSTSRIKSLMEAEKEMREMAIIHQLQLDALDAAGSYVGSWEPRRK 245


>At5g41660.1 68418.m05061 hypothetical protein similar to unknown
           protein (emb|CAB86921.1)
          Length = 210

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 250 PSRWC*VRQGPSSPCPIDAPCP 315
           PS W  +  G  S  P+DAPCP
Sbjct: 119 PSHWTSLMAGDLSLGPLDAPCP 140


>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 357

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 599 PLCTRCDIRSCRLSRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSASTFKW 444
           P C+   I+S    R+ +    L   LVPK S   S+     T+S A T+K+
Sbjct: 70  PSCSHHHIQSLLHDRLHRDDHWLCDHLVPKISSAISSGFVDLTVSVAVTYKY 121


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 250 PSRWC*VRQGPSS-PCPIDAPCPSVAGSRTAS 342
           PS +  V + PS+ P P+  P P VAG R A+
Sbjct: 89  PSAFTAVPRSPSAVPLPLPLPLPEVAGIRNAA 120


>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 457

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 26/97 (26%), Positives = 42/97 (43%)
 Frame = -3

Query: 602 PPLCTRCDIRSCRLSRVKKPSVVLVQLLVPKRSDPSSTARTRFTISSASTFKWAFERVAV 423
           PP C  C      LSR  KP   L++ L  K+  PS +   +  + S  T + A   + +
Sbjct: 312 PPKCLNCGRYGHLLSRCSKP---LMKKLPFKKDLPSGSKEVQILVISLPTSQEAQRGIML 368

Query: 422 RSAFAT*RQCGNGA*TISIRPRCTRRREAVLDPATEG 312
            S+    +     A +   R R +++R A L  A+ G
Sbjct: 369 ESSIEDQKTTTTQAKSKCRRSR-SKKRSASLPSASIG 404


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 295 DTARKDLAALNTIAKGCRNLFEL 227
           DT  K +AALN I  GC N ++L
Sbjct: 463 DTPYKSVAALNCIILGCANTWDL 485


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 185 SDCIEKDVRDLKSSKFEQVATSLRDGVECG 274
           SDC +K+++D K S+ E+    L    ECG
Sbjct: 92  SDCYDKELKDDKKSENERHCDELELDDECG 121


>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
           identical to F-box protein family, AtFBL4 (GP:21536497)
           [Arabidopsis thaliana]; similar to grr1 GI:2407790 from
           [Glycine max]
          Length = 610

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 304 HLLDTARKDLAALNTIAKGCRNLFEL 227
           HL+D +     A+ +IAKGCRNL +L
Sbjct: 404 HLVDCSGIGDIAMCSIAKGCRNLKKL 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,188
Number of Sequences: 28952
Number of extensions: 230787
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)