Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20041
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.51 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.51 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    24   0.88 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.6  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   6.2  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 202 LGRVQQRRGGASESLSKRLEYRTGPALLQC 291
           LGR++   GG  + LS   E  T P L+ C
Sbjct: 214 LGRIKGISGGEKKRLSFAAEVLTNPKLMFC 243


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 202 LGRVQQRRGGASESLSKRLEYRTGPALLQC 291
           LGR++   GG  + LS   E  T P L+ C
Sbjct: 214 LGRIKGISGGEKKRLSFAAEVLTNPKLMFC 243


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -1

Query: 220 SVVLFRAT---AAIRIEKRPAITHCLTMCLRVRHTRVLVSASFYITVHTTVP 74
           +VV + +T    A+ I++  AITH +      +  RVLV  ++ +++  ++P
Sbjct: 127 AVVTYSSTYVLVALSIDRYDAITHPMNFSGSWKRARVLVMLAWLLSILFSLP 178


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -3

Query: 521 HIRLFIWMCKFY 486
           H+R F+ +C FY
Sbjct: 534 HVRAFLGLCNFY 545


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 317 PDAIDLFSSRTSEKRSE 367
           PDAI+   S+ SEK+ E
Sbjct: 70  PDAIETDCSKCSEKQKE 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,342
Number of Sequences: 336
Number of extensions: 3074
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)