Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20041
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0506 - 18188785-18190599 33 0.18
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 30 1.7
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 29 2.2
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 29 3.9
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 29 3.9
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 5.1
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 28 5.1
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 28 6.8
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 27 8.9
08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569 27 8.9
04_03_0919 + 20820010-20821707 27 8.9
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 27 8.9
02_03_0040 + 14262137-14262182,14262456-14262738,14262824-142629... 27 8.9
>09_04_0506 - 18188785-18190599
Length = 604
Score = 33.1 bits (72), Expect = 0.18
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +2
Query: 74 RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNR--DAEERRRVS 247
R R DR+ + D+ R D HG+ SDR + SSG +R D +RRR+S
Sbjct: 543 RERDRDRERERYRDDRDRHGDYHRHGKRESDRNEDWDRGRSSGRRSRSREVDHSKRRRMS 602
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 281 SAGPVRYSRRFERLSDAPPRLCCTLPSHCCYQDRKTTCDHSLPHHV 144
S G + S +PP +LPS +++ HSLPHH+
Sbjct: 49 SGGLPHFGGAVSSSSSSPPSYSSSLPSSYYNNIQRSISSHSLPHHL 94
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 71 RRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRR 241
R+ R +++ + R +R + S + E+ S+ S Y D S+GSE EERRR
Sbjct: 79 RKRRRKEKERRHRR-RRSRSASSGSSSESESESESS-YSDCSAGSESETDSEEERRR 133
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/79 (26%), Positives = 29/79 (36%)
Frame = +3
Query: 210 STTETRRSVGESLKASGVSNRPRAPTMQSGACXXXXXXXXXXXAQEPPKNAPKHQLGDDR 389
S++ + + S +SG + P AP GA A PP AP DR
Sbjct: 34 SSSSSTTAAASSSSSSGGNRAPPAPNPTRGAPWLQKWGPTDPAAPPPPPPAPSPTSSIDR 93
Query: 390 ITLVVDNTRFVVDPSQFTA 446
I + N D + TA
Sbjct: 94 IVHRLRNLGLASDDDEPTA 112
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 186 LIAAVARKSTTETRRSVGESLKASGVSNRPRAP 284
L+AA A ++ R + KA G +RPRAP
Sbjct: 16 LLAAAASTTSPAPSRGISTLAKAPGAGSRPRAP 48
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 162 VIAGRFSILIAAVARKSTTETRRSVGESLKASGVSNRPRAPTMQSGA 302
V +GR ++ A+V+ +T + SVG + + S S PR P GA
Sbjct: 179 VFSGRRTLSSASVSSINTASST-SVGSTPRGSSASTSPRTPATARGA 224
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 188 DSSSGSEEYNRDAEERRRVSQSVWSIE 268
D++S EE+N E + VS S W+IE
Sbjct: 321 DTASRREEFNHSRERKSSVSGSNWNIE 347
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 PRRHRSVDRDVKARGDEHARMSDSQA---HGEAMSDRRSFFYPDSSSGSEEYNRDAEERR 238
PRRHR + + RGDE +R + ++ H ++ R G +E D + R
Sbjct: 31 PRRHRPAREEEEGRGDERSRSTWAEVVSDHKGGEAEERPDHRNSRRDGRQERREDGDWER 90
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +2
Query: 71 RRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRS----FF--YPDSSSGSEEYNRDAEE 232
R HR R+ A +E R + +GE D S F P SSS E +++A+E
Sbjct: 977 RHHRRHHREAAAAAEERRRPAAGDYYGEEEEDDESEEEQHFKRRPSSSSRREREHQEAQE 1036
Query: 233 RRRVSQ 250
R S+
Sbjct: 1037 EPRRSR 1042
>08_01_0679 - 5933187-5933258,5933378-5933592,5934527-5934569
Length = 109
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 155 PHHVPESQTYARARLRELLHHGPHYGASEAEI 60
P P +QT R ELL+HG G + EI
Sbjct: 61 PRRSPSAQTRRRPAAAELLNHGLDSGVEDDEI 92
>04_03_0919 + 20820010-20821707
Length = 565
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 334 EVDGIGLLDEHAPDCIVGARGLFDTPDALRDSPTLLRVSVVLFRATAAIRIEKRPAITHC 155
E D L+ E+ P+C + LF+ D + D T ++++ + R A + R I HC
Sbjct: 335 EGDNRLLVYEYMPNCSLDVC-LFEANDIVLDWTTRYQIAIGVARGLAYLHDSCRDCIIHC 393
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 177 FSILIAAVARKSTTETRRSVGESLKASGVSNRPRAPT 287
++ LIAA AR + E R + + +KASGV+ P A T
Sbjct: 172 YTSLIAAYARNALHEEARELLDQMKASGVA--PTAAT 206
>02_03_0040 +
14262137-14262182,14262456-14262738,14262824-14262923,
14263027-14263293,14263378-14263455,14263552-14263653,
14263731-14263780,14263864-14263957,14264060-14264161,
14264855-14264960,14265056-14265414,14265572-14265646,
14265890-14265907
Length = 559
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +1
Query: 193 QQWLGRVQQRRGGASESLSKRLEYRTGPALLQCSPGRVRLVTRCHRPLQLKNL 351
Q W+ +Q R+ A++++ + E+ + +C P V + RP+ ++ L
Sbjct: 124 QMWVDMLQWRKEFAADTILEDFEFEEADKVAECYPQGYHGVDKEGRPVYIERL 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,236
Number of Sequences: 37544
Number of extensions: 376349
Number of successful extensions: 1100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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