Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20041
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3384| Best HMM Match : K_tetra (HMM E-Value=0.003)                  66   3e-11
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)                30   1.3  
SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)                   29   4.0  
SB_27575| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7)                      29   4.0  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)               28   5.2  
SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)             28   5.2  
SB_28789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   6.9  
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      28   6.9  
SB_37423| Best HMM Match : K_tetra (HMM E-Value=3.2e-31)               27   9.1  
SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12)                  27   9.1  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         27   9.1  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 27   9.1  
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               27   9.1  
SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.1  

>SB_3384| Best HMM Match : K_tetra (HMM E-Value=0.003)
          Length = 395

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/47 (59%), Positives = 38/47 (80%)
 Frame = +3

Query: 384 DRITLVVDNTRFVVDPSQFTAHPNTMLGRMFSSGIEFTHPNEEANMK 524
           +++TLVVDNTRFVVD S FTAHPNTM+GRMF S  ++T  N++  ++
Sbjct: 101 EKLTLVVDNTRFVVDRSLFTAHPNTMMGRMFGSNNDYTTRNDKGEVE 147



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 21/35 (60%), Positives = 30/35 (85%)
 Frame = +2

Query: 509 RGEYEVAEGISATVFRAILEYYRGGTIRCPPTVSV 613
           +GE EVA+GISA+VF+ IL++Y+ G I CPP+VS+
Sbjct: 143 KGEVEVAQGISASVFKCILDFYKKGIINCPPSVSI 177


>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
          Length = 770

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 299 PGLHCRSAG--PVRYSRRFERLSDAPPRLCC 213
           PGL C+     P R  +R +R+SD PP L C
Sbjct: 635 PGLWCKRNNEVPRRSDKRVDRISDCPPGLWC 665


>SB_52323| Best HMM Match : DUF1388 (HMM E-Value=5.8)
          Length = 302

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 95  DVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYN--RDAEERRRVSQS 253
           DVK   D      D++AH      RRS   P+  +G  E +  RD EER+ V +S
Sbjct: 226 DVKRSPDVRRTPDDARAHKSPDVPRRSPDVPNRYNGVHEKSPWRDGEERKIVIKS 280


>SB_27575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 360 APKHQLGDDRITLVVDNTRFVVDPSQFTAHPNTMLG 467
           A +   GD R+T  V   RF    S     PNT+LG
Sbjct: 52  AQRRSAGDKRVTFNVSGRRFETWESTLKRFPNTVLG 87


>SB_43693| Best HMM Match : ACBP (HMM E-Value=2.7)
          Length = 354

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +2

Query: 95  DVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYN--RDAEERRRVSQS 253
           DVK   D      D++AH      RRS   P+  +G  E +  RD EER+ V +S
Sbjct: 200 DVKRSPDVRRTPDDARAHKSPDVPRRSPDVPNRYNGVHEKSPWRDGEERKIVIKS 254


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 366 KHQLGDDRITLVVDNTRFVVDPSQF 440
           K QL  DR  LV D T+FV+D ++F
Sbjct: 800 KTQLVIDRTQLVTDGTQFVIDKTRF 824


>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 211 VQQRRGGASESLSKRLEY-RTGPALLQCSPGRVRLVT 318
           ++ R GGA +S + R +  +T  ALLQ   G+V+LVT
Sbjct: 163 IKSRGGGARDSSTSRGQRSQTRSALLQGDKGKVKLVT 199


>SB_25131| Best HMM Match : Ion_trans (HMM E-Value=1.9e-37)
          Length = 464

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 381 DDRITLVVDNTRFVVDPSQFTAHPNTMLG 467
           D R+TL V   RF    S    +PNT+LG
Sbjct: 67  DKRVTLNVSGRRFCTWESTLKKYPNTLLG 95


>SB_28789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 110 GDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEER 235
           GD H+  ++S   GE++ D R   +P   SGS E N+ +E +
Sbjct: 14  GDGHSGETESITQGESLRD-RMLKHPQQGSGSHE-NQKSESK 53


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 441  TAHPNTMLGRMFSSGIEFTHPNEEANMK 524
            T++   +LGR FS G+EF H N  +  +
Sbjct: 2298 TSYTLRVLGRTFSYGVEFAHLNHSSKTR 2325


>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 240 ESLKASGVSNRPRAPTMQS 296
           ESLK S VSN P++P M+S
Sbjct: 612 ESLKRSYVSNNPKSPLMES 630


>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = +2

Query: 74  RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRVSQS 253
           +H+      +    +H     S+ HG + S R S +  DSS GS      +   R V +S
Sbjct: 150 KHKQHRPHEEGSSKKHKSHHSSRQHGHSKSGRTSSYSSDSSPGSG--REKSSHSRSVHKS 207

Query: 254 VWSIEQAPRSYNAVR 298
             S    P S++  R
Sbjct: 208 HSSKHSHPSSHSTNR 222


>SB_37423| Best HMM Match : K_tetra (HMM E-Value=3.2e-31)
          Length = 153

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 342 QEPPKNAPKHQLGDDRITLVVDNTRFVVDPSQFTAHPNTMLG 467
           QE  K   K +  ++  T+ V   RF+VD   F+  P+T+LG
Sbjct: 33  QEREKAKEKARNRNNFTTINVSGRRFLVDIEIFSRFPDTLLG 74


>SB_35869| Best HMM Match : Piwi (HMM E-Value=4.6e-12)
          Length = 243

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 366 KHQLGDDRITLVVDNTRFVVDPSQFTAHPNTMLGR 470
           +H   D R  L+    RF+    +FTAH + ++ R
Sbjct: 170 RHATHDKRHRLITREDRFITREDRFTAHEDRIIAR 204


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 467 PKHCVGMRRELRRIDDKPRIVHNQRDSVISE 375
           PK  + + R  R +DD+P  V  +R SV +E
Sbjct: 452 PKTGLSLHRSCRGVDDRPLRVERERKSVSAE 482


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
 Frame = -3

Query: 176 TTCDHSLPHHVPESQTY-------ARARLRELLHHGPHYGASEAE 63
           +TCD+S PH  PES T           R R   HH P     + E
Sbjct: 391 STCDNSTPHKPPESPTELSTMPQPVSPRERGKAHHSPKSSPEDGE 435


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 287  CRSAGPVRYSRRFERLSDAPPRLCCTLPSHCCYQDRKTTCDHSLP 153
            C +  P  Y  + +      P LC T P+  CY    + C H+ P
Sbjct: 880  CVAQSPTLYVTQTQLFVTQSPTLCHTKPNSLCYTKPNSLC-HTKP 923


>SB_344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 71  RRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDS-SSGSEEYNRD 223
           R  RSV++D +  GD  A+  D++  G++  D  S  Y D+   G+++ + D
Sbjct: 460 RESRSVEKDNE--GDADAKDEDAKLEGKSPEDEISEHYQDTGEDGNDQEDSD 509


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,958,328
Number of Sequences: 59808
Number of extensions: 419028
Number of successful extensions: 1500
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)