Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20041
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical p...    53   2e-07
U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical p...    53   2e-07
U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical pr...    53   2e-07
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U41533-11|AAO38614.1|  387|Caenorhabditis elegans Hypothetical
           protein R05F9.1c protein.
          Length = 387

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/35 (60%), Positives = 31/35 (88%)
 Frame = +2

Query: 509 RGEYEVAEGISATVFRAILEYYRGGTIRCPPTVSV 613
           R E+EVA+G++++ FRAIL+YY+ GT+RCP +VSV
Sbjct: 80  RDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 114



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 384 DRITLVVDNTRFVVDPSQFTAHPNTMLGRMFS 479
           D++ L+VD TRF+V     T+ P+TMLGRMFS
Sbjct: 31  DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFS 62


>U41533-10|AAA83172.1|  491|Caenorhabditis elegans Hypothetical
           protein R05F9.1a protein.
          Length = 491

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/35 (60%), Positives = 31/35 (88%)
 Frame = +2

Query: 509 RGEYEVAEGISATVFRAILEYYRGGTIRCPPTVSV 613
           R E+EVA+G++++ FRAIL+YY+ GT+RCP +VSV
Sbjct: 184 RDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 218



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 384 DRITLVVDNTRFVVDPSQFTAHPNTMLGRMFS 479
           D++ L+VD TRF+V     T+ P+TMLGRMFS
Sbjct: 135 DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFS 166


>U41533-8|AAA83171.2|  588|Caenorhabditis elegans Hypothetical
           protein R05F9.1b protein.
          Length = 588

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 21/35 (60%), Positives = 31/35 (88%)
 Frame = +2

Query: 509 RGEYEVAEGISATVFRAILEYYRGGTIRCPPTVSV 613
           R E+EVA+G++++ FRAIL+YY+ GT+RCP +VSV
Sbjct: 281 RDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSV 315



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)
 Frame = +3

Query: 384 DRITLVVDNTRFVVDPSQFTAHPNTMLGRMFS 479
           D++ L+VD TRF+V     T+ P+TMLGRMFS
Sbjct: 232 DKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFS 263


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 615 CTDTVGGQRIVPPR*YSSIALNTVAEIPSATSYSPL 508
           CT   G   ++ P+ Y SI  + +++IP  TS  P+
Sbjct: 638 CTTENGNFHVIDPKTYGSIYSHAISKIPGGTSVGPV 673


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 615 CTDTVGGQRIVPPR*YSSIALNTVAEIPSATSYSPL 508
           CT   G   ++ P+ Y SI  + +++IP  TS  P+
Sbjct: 638 CTTENGNFHVIDPKTYGSIYSHAISKIPGGTSVGPV 673


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 71  RRHRSVDRDVKARGDEHARMSD---SQAHGEAMSDRRSFFYPDSSSGSEEYNRDAEERRR 241
           ++ RSV+++   R DEH R  D    +    +  D RS         S  + RD ++ RR
Sbjct: 533 KKRRSVEKERPRRADEHRRDRDRDRERDRDRSHRDVRSSGRSKDIKASSSHRRDRDDARR 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,403,241
Number of Sequences: 27780
Number of extensions: 300607
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)