Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20041
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s...    29   1.9  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    29   1.9  
At2g36420.1 68415.m04471 expressed protein                             29   2.4  
At3g60320.1 68416.m06742 expressed protein contains Pfam profile...    27   7.5  
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    27   7.5  
At3g60450.1 68416.m06761 expressed protein                             27   9.9  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    27   9.9  
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put...    27   9.9  

>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
           similarity to F-box protein FBL2 GI:6063090 from [Homo
           sapiens]
          Length = 942

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 171 LRSLIASPCA*ESDIRACSSPRAFTSRSTLRCLRGGDLYEPFFEDFVLDNCFH 13
           L+SLI   C   + +R C+S  A  S    R +   +L  P  E   LD C H
Sbjct: 587 LKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDH 639


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 74  RHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRDAE-ER-RRVS 247
           R  +   DV+  G EH R   S       +DRRS    +     + Y R+AE ER R+  
Sbjct: 406 RSDAAANDVETSG-EHNRPDTSSPDWSKRNDRRSRERGEKEQEMDRYEREAERERSRKER 464

Query: 248 QSVWSIEQAPRSY 286
           +    +E A R+Y
Sbjct: 465 EQRRKLEDAERAY 477


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 284 RSAGPVRYSRRFERLSDAPPRLCCTLPSHCCYQDRKTTCDHSLPHHVPESQTYAR 120
           R + P   SRR ER+ +   +  C  P H   Q   ++  H  PH    + + AR
Sbjct: 164 RGSEPTSSSRR-ERIVEISDKCFCESPFHFVLQTTPSSSGHQTPHFTSTATSPAR 217


>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
           PF04782: protein of unknown function (DUF632), PF04783:
           protein of unknown function (DUF630)
          Length = 796

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +2

Query: 179 FYPDSSSGSEEYNRDAEERRRVSQSVWSIEQAPRSYNAVRGVFV**PDAIDLFSSRTSEK 358
           FYP S   SE +NR A+E++  S + ++ E    +  +    F         F S  ++ 
Sbjct: 185 FYPPSPPDSEFFNRKAQEKKHNSDNRFNDEDT-ETVRSEYDFFDTRKQKQKQFESMRNQV 243

Query: 359 RSEAPTRR*PNHVGCGQYE 415
             E  T R    V C ++E
Sbjct: 244 EEETETER--EEVQCSEWE 260


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71  RRHRSVDRDVKARGDEHARMSDSQAHGEAMSDRRSFFYPDSSSGSEEYNRD-AEERRR 241
           R  R  D+D   R  E  + SDS+   E   +R      +   G  E+ RD  ++R+R
Sbjct: 79  RERRRRDKDRVKRRSERRKSSDSEDDVEEEDERDKRRVNEKERGHREHERDRGKDRKR 136


>At3g60450.1 68416.m06761 expressed protein
          Length = 274

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 146 HGEAMSDRRSFFYPDSSSGSEEYNRDAEERRRVSQSVWSIE 268
           HGE +    S FY D++    +Y    E RR+VS    S++
Sbjct: 201 HGEGVGTTFSTFYKDTTVYEVDYCAYVEMRRQVSSEDGSVK 241


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 278 RSYNAVRGVFV**PDAIDLFSSRTSEKRSEAPTR 379
           R+Y  +RG+ +   + ID  + +++E ++EAP+R
Sbjct: 471 RTYETIRGLEIEANEMIDEETKKSTETKTEAPSR 504


>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
           putative identical to SP:O04019 from [Arabidopsis
           thaliana]
          Length = 423

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 381 DDRITLVVDNTRF-VVDPSQFTAHPNTMLGRMFSSGIEFTHPNEEANMK*LKVSPR 545
           DDRI ++    R  ++DP+   +      GR+    IEF HP EEA  + L++  R
Sbjct: 307 DDRIKVIAATNRADILDPALMRS------GRL-DRKIEFPHPTEEARGRILQIHSR 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,562
Number of Sequences: 28952
Number of extensions: 281662
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)