Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20040
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048 89 2e-18
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 83 1e-16
06_03_0811 + 24830496-24831194 77 2e-14
02_01_0691 - 5167260-5167937 72 4e-13
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652... 32 0.35
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91... 31 0.81
06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932 31 1.1
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 30 1.4
08_01_0627 + 5451140-5451839,5452635-5452662,5452730-5452786,545... 29 2.5
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 29 2.5
11_06_0265 - 21788531-21789798,21789914-21789947 29 3.3
12_01_0945 + 9351915-9351929,9352221-9352386,9352903-9353024,935... 29 4.3
10_07_0115 - 13008835-13008877,13009117-13010621 29 4.3
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 4.3
01_06_0928 + 33085403-33089224 29 4.3
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 28 5.7
10_08_1007 - 22210263-22210400,22210506-22210547,22210626-222107... 28 7.6
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 7.6
>01_06_0234 - 27739272-27739525,27739810-27739889,27740894-27741048
Length = 162
Score = 89.4 bits (212), Expect = 2e-18
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ + GAFTP CS H+PG++ A++LK+ GV +I+ VSVNDP+VM AW +
Sbjct: 35 GKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPE 94
Query: 404 KGKVRMLADPSGNFIKALDLGTNLPPLG-GFRSKRF 508
V+ LAD G + KAL L +L G G RS+RF
Sbjct: 95 NKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRF 130
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +3
Query: 132 MAPIKVGDQLPAADL--FE-DSPANKVNICELTAGKKVVLFAVP 254
MAP+ VGD LP L F+ + +V++ L AGKKVVLF VP
Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVP 44
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ I GA+T CS+ H+P Y N DKLK+ GV ++CVSVNDPY + W +
Sbjct: 70 GKKVVIFGLPGAYTGVCSQAHVPSYKNNIDKLKAKGVDSVICVSVNDPYALNGWAEKLQA 129
Query: 404 KGKVRMLADPSGNFIKALDLGTNL-PPLGGFRSKRFRWSSLTARSKI 541
K + D G+F K+LDL +L L G RS RWS+ KI
Sbjct: 130 KDAIEFYGDFDGSFHKSLDLEVDLSAALLGRRS--HRWSAFVDDGKI 174
>06_03_0811 + 24830496-24831194
Length = 232
Score = 76.6 bits (180), Expect = 2e-14
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 3/98 (3%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
GK+ + GAFTP C++ H+PG+V A +L++ GV + CVSVND +VM AW
Sbjct: 103 GKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGV 162
Query: 404 KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRF 508
+V +L+D +G +A+ + +L P G G RS+R+
Sbjct: 163 GDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRY 200
Score = 51.2 bits (117), Expect = 7e-07
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Frame = +3
Query: 96 ASRRALHISQLSMAPIKVGDQLPAADL-FEDSPANK---VNICELTAGKKVVLFAVP-AP 260
A RRA+ S + A I VGD+LP A L + DSP + V + +LTAGKKVVLFAVP A
Sbjct: 56 APRRAVSASAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAF 115
Query: 261 SPRDVLKH 284
+P KH
Sbjct: 116 TPTCTQKH 123
>02_01_0691 - 5167260-5167937
Length = 225
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Frame = +2
Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
G++ + GAFTP CS+ HLPG+++ A +L + GV I CVSVND +VM AW
Sbjct: 95 GRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGL 154
Query: 404 -KGKVRMLADPSGNFIKALDLGTNL--PPLG-GFRSKRF 508
V +L+D + +AL + +L P+G G RS+R+
Sbjct: 155 GDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRY 193
Score = 50.8 bits (116), Expect = 9e-07
Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = +3
Query: 72 GITAFTNRASRRALHISQLSMAPIKVGDQLPAADLFEDSPAN----KVNICELTAGKKVV 239
G+ A RA+RR+ + +A I VGD+LP A L PA+ V + ELTAG+K V
Sbjct: 40 GVRAAGARAARRSAASASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAV 99
Query: 240 LFAVP-APSPRDVLKH 284
LFAVP A +P KH
Sbjct: 100 LFAVPGAFTPTCSQKH 115
>06_01_0861 +
6527279-6527582,6527619-6527719,6527817-6528042,
6528132-6528475,6528624-6528989,6529080-6529347,
6529479-6529696
Length = 608
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 230 EGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNT 403
+GCI G P C H+ + K +S V V + YV+A W G+ H++
Sbjct: 135 QGCIGALDGTHIPACVPMHMQDRFRGRKKFQSQNVLAAVDFDLRFLYVLAGWEGSAHDS 193
>05_01_0135 +
908803-909059,913133-913187,913499-914047,914140-914365,
914446-914906
Length = 515
Score = 31.1 bits (67), Expect = 0.81
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 230 EGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNTK 406
EGCI G P H+ + K + V V + YV+A W G+ H++
Sbjct: 287 EGCIGALDGTHVPASVPAHMQDRFRGRKKSPTQNVLAAVDFDLRFIYVLAGWEGSAHDSH 346
Query: 407 GKVRMLADPSG 439
L+ PSG
Sbjct: 347 VLQDALSRPSG 357
>06_03_0352 - 19802826-19803148,19803232-19803457,19803549-19803932
Length = 310
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 230 EGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAW-GAQHNTK 406
EGCI G P H+ + + + V V + Y++A W G+ H++
Sbjct: 128 EGCIGALDGTHVPATVPAHMQDRFRGRKTIPTQNVLAAVDFDLRFTYILAGWEGSAHDSH 187
Query: 407 GKVRMLADPSG 439
L+ PSG
Sbjct: 188 VLQDALSRPSG 198
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 535 GPCCQR*PSEPFGAETSERRQIGAQVQSLDEVAAG 431
G C R P P GAE ++ R A+++SL+ V+ G
Sbjct: 508 GGCEHRAPRSPEGAEAADARLAVAEIKSLEPVSPG 542
>08_01_0627 +
5451140-5451839,5452635-5452662,5452730-5452786,
5453205-5453874
Length = 484
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 273 HPGVKAPAPQIIQPSFPPSTHKYSPY*RENLRINQQQAADPRP 145
+P P PQ+ PSFP +T S R R + DP+P
Sbjct: 26 NPPEPQPQPQLATPSFPTTTDTASRRRRRRRRRGRGNRHDPQP 68
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +2
Query: 251 AGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLAD 430
AGAF K P Y + D L GV E++ SV+ P + A HN V +A
Sbjct: 178 AGAFDGNGEKKIRP-YARKDDFLLP-GVVEVIIKSVSSPAIAPACTRTHNVPAVVFSVAG 235
Query: 431 PSGNF 445
+ NF
Sbjct: 236 YTDNF 240
>11_06_0265 - 21788531-21789798,21789914-21789947
Length = 433
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Frame = +2
Query: 221 GGKEGCIIC----GAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWG 388
G GC++ G P + TH G +Q + + S+G E+VC D Y MA +
Sbjct: 128 GADGGCVLVNPFSGEKVSLPSPTATHSCGAIQRSVPV-SNGDGEVVCTIHADEYAMALYK 186
Query: 389 A 391
A
Sbjct: 187 A 187
>12_01_0945 +
9351915-9351929,9352221-9352386,9352903-9353024,
9353098-9353214,9356997-9357077,9357204-9357272,
9357727-9357790,9357988-9358067,9358164-9358247,
9358418-9358502,9359658-9359743,9359924-9360045,
9360841-9360901,9360981-9361166,9363622-9363723,
9363803-9363844,9363949-9364086
Length = 539
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -3
Query: 349 AHYFSNSIRFQFICVLYVSRQVCFRTS--RGEGAGTANNTTFFPAVNSQIFTL 197
AH+F N +I Y QV T G GAG + + F +S +F +
Sbjct: 218 AHFFRNEFLLNYIIATYSKPQVSLLTGIVMGGGAGVSIHGRFRVVTDSTVFAM 270
>10_07_0115 - 13008835-13008877,13009117-13010621
Length = 515
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = -3
Query: 379 RHHIRVINRHAHYFSNSI----RFQFICVLYVSRQVCFRTSRGEGAGTANNTTFFPAVNS 212
R HIR A +F ++ RF+ + S VCFR G G G A N AVN+
Sbjct: 395 RAHIRRHVAMAEWFERAVSADERFEVVAKRRFSL-VCFRLRGGGGGGDAMNRELLAAVNA 453
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 591 LSAERTRQASAIGLHIQILDLAVNDDHRNLLERKPPSGGRLVPRSRAL 448
+ + +++ S +HI +D N ++RN LE K P R+ + RAL
Sbjct: 269 MPTKSSKEPSTSVIHIPRIDSIRNSENRNSLELKDPFHKRVEMKLRAL 316
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = -1
Query: 483 SGGRLVPRSRALMKLPLGSASIRTFPLVLC*APQAAITYGSLTDTHTISATPSD 322
SG LVP S L +L L S SI L LC ++ SLT+ T++ PS+
Sbjct: 931 SGLPLVPPS-GLCELYLSSCSITDGALALCIGGLTSLRELSLTNIMTLTTLPSE 983
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 375 WRLGELSTTLKERCVC*PIPAATSSRLWTWAPICRRSEVSAPKGSD 512
W+ + ++K++ +PA+ S W AP+ + +E S K SD
Sbjct: 1718 WKSAGVDDSVKDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQSD 1763
>10_08_1007 -
22210263-22210400,22210506-22210547,22210626-22210727,
22212239-22212337,22212413-22212473,22213311-22213432,
22217700-22217786,22217958-22218041,22218141-22218220,
22218404-22218467,22218904-22218972,22219099-22219179,
22219626-22219694,22220108-22220140
Length = 376
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -3
Query: 349 AHYFSNSIRFQFICVLYVSRQVCFRTS--RGEGAGTANNTTFFPAVNSQIFTL 197
AH+F N +I Y QV T G GAG + + F S +F +
Sbjct: 112 AHFFRNEFLLNYIIATYNKPQVSLLTGIVMGGGAGVSIHGRFRVVTESTVFAM 164
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -3
Query: 496 AETSERRQIGAQVQSLDEVAAGIG*HTHLSFSVVLSSPSRHHIRVINRHAHYFSNSIRFQ 317
A+ + Q+ Q+++ E+ + ++ +L + + +R N H HYFS I +
Sbjct: 2349 AQQMNQSQLDVQIETATELFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYL 2408
Query: 316 F 314
F
Sbjct: 2409 F 2409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,087,712
Number of Sequences: 37544
Number of extensions: 495664
Number of successful extensions: 1293
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -