Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20040
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          73   3e-13
SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3)                      31   0.63 
SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)                       30   1.9  
SB_22009| Best HMM Match : Vicilin_N (HMM E-Value=0.6)                 29   2.5  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               29   3.4  
SB_40724| Best HMM Match : Vicilin_N (HMM E-Value=0.53)                28   5.9  
SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)                   28   5.9  
SB_46851| Best HMM Match : Vicilin_N (HMM E-Value=0.6)                 28   5.9  
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_43178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)                   28   7.7  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_14724| Best HMM Match : UPF0233 (HMM E-Value=5.4)                   28   7.7  
SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_16475| Best HMM Match : Vicilin_N (HMM E-Value=1.6)                 28   7.7  
SB_6026| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 37/100 (37%), Positives = 56/100 (56%)
 Frame = +2

Query: 224 GKEGCIICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNT 403
           GK   +    GAFTP CS THLP Y + A   K+ GV +I+C+SVND +VM +W A    
Sbjct: 34  GKTVVLFALPGAFTPTCSSTHLPRYNELAPVFKAQGVDDIICLSVNDTFVMNSWAADQKA 93

Query: 404 KGKVRMLADPSGNFIKALDLGTNLPPLGGFRSKRFRWSSL 523
           +  +  + D +G F + + +  +   L GF  + +R+S L
Sbjct: 94  E-NITFIPDGNGEFSEGMGMLVDKSDL-GFGKRSWRYSML 131


>SB_39102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +2

Query: 317 LKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVRMLADPSGNFIKALDLGTNLPP-LGGF 493
           +KS GV  + C++VNDP+VM+AWG  +  +G             KA+DL  +  P LG  
Sbjct: 53  IKSKGVDVVACIAVNDPFVMSAWGEANGCQG-------------KAVDLELDATPFLGNI 99

Query: 494 RSKRF 508
           RSKR+
Sbjct: 100 RSKRY 104



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +1

Query: 499 QKVPMVIVDSKVQDLNVEPDGTGLSCSL 582
           ++  M++ D  V+ L+VEPDGTGL+CSL
Sbjct: 102 KRYAMLVEDGVVKQLHVEPDGTGLTCSL 129


>SB_15071| Best HMM Match : XAP5 (HMM E-Value=3.3)
          Length = 412

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 393 STTLKERCVC*PIPAATSSRLWTWAPICRRSEVSAPKGSDGHR*QQGPRSECG 551
           ST+ ++RC    +P ATSS       + RR +   P GSDG + ++G  ++ G
Sbjct: 307 STSQQKRCS--RVPRATSSTEHFHNTVPRREDEHQPAGSDGRKAEEGVANQYG 357


>SB_42557| Best HMM Match : GAD (HMM E-Value=1.4)
          Length = 366

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 257 AFTPGCSKTHLPGYVQNADKLKSDGVAE-IVCVSVN 361
           A  PG S+  L  + + A  +KSD +A+ IVCV +N
Sbjct: 84  ASIPGFSQEQLQAWARRAKAVKSDSLADAIVCVQLN 119


>SB_22009| Best HMM Match : Vicilin_N (HMM E-Value=0.6)
          Length = 208

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +1

Query: 385 GSSAQH*RKGAYASRSQRQLHQGSGPGHQSAAARRFPLQKVPMVIVDSKVQDLNVEPDGT 564
           G+SA++        + QRQ  +G  P HQ     +   QKV  +   ++ QD+N++    
Sbjct: 123 GTSAKYVSGRTGRQKRQRQKRKGQEPPHQQDVEVQEAQQKVDDLTRQNRQQDVNIDEQDN 182

Query: 565 GLSCSLG 585
                +G
Sbjct: 183 NEEAPVG 189


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 300 TYPGKCVLEHPGVKAPAPQIIQPSFPPSTHKYSPY*RENLRI 175
           TY G     H   +  +P+ + P+ PP +H  SPY +E  R+
Sbjct: 795 TYHGGSTQSHAHKRESSPKALLPT-PPLSHALSPYVKETNRM 835


>SB_40724| Best HMM Match : Vicilin_N (HMM E-Value=0.53)
          Length = 174

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 427 RSQRQLHQGSGPGHQSAAARRFPLQKVPMVIVDSKVQDLNVEPDGTGLSCSLG 585
           + QRQ+ +   P HQ     +   QKV  + + ++ QD+N++         +G
Sbjct: 98  KRQRQMRKRQEPPHQQDVEVQEAQQKVDDLTIQNRQQDVNIDEQDNNEDAPVG 150


>SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 24  KNFYLLMFLTGSSIIRGITAFTNRASRRALHISQLSMAPIKVGDQLPAADLFEDSPANKV 203
           K+F +  +LTGS     + +FT R  +  ++  Q  +  ++     P   +FE SP + +
Sbjct: 10  KSFLVHRYLTGSCA--KMESFTGRHKKEVIYEGQSHLLLVRDETGPPDLQVFEMSPLSMI 67

Query: 204 NI 209
           N+
Sbjct: 68  NV 69


>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
          Length = 268

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 270 PGVKAPAPQIIQPSFPPSTHKYSP 199
           P +  P+  + QPS  PSTH YSP
Sbjct: 144 PHLGYPSQSLYQPSPHPSTHLYSP 167


>SB_46851| Best HMM Match : Vicilin_N (HMM E-Value=0.6)
          Length = 155

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 427 RSQRQLHQGSGPGHQSAAARRFPLQKVPMVIVDSKVQDLNVEPDGTGLSCSLG 585
           + QRQ+ +   P HQ     +   QKV  +   ++ QDLN+E         +G
Sbjct: 78  KRQRQMRKRQEPPHQQDVEVQEAQQKVDDLTRQNRQQDLNIEEQDNNEDAPVG 130


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
 Frame = +2

Query: 239 IICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVR 418
           +I G G     C    L       D   +D V    C +V +   +  +    N K KV 
Sbjct: 496 VILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAF-CETVVETSSLKCFAETPNKKNKVT 554

Query: 419 MLADPSGNFI------KALDLGTNLPPLGGFRSKRFRWSSLTARS 535
           M+A+P    +      + + +  N   LG F   ++ W  L ARS
Sbjct: 555 MIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARS 599


>SB_43178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -2

Query: 656 NFVFMLFNFAMQYYTLPTSL*SYRPREQDRPVPSGSTFRSWTLLSTMTIGTFWSGNLRAA 477
           N+     N        P +   Y P+  D  +    TF  W LL+ +TIG F  G  R+ 
Sbjct: 123 NYTLAALNLTFPTTPSPNTTSPYLPKI-DIKLDIQQTF--WVLLAIITIGEFLGGPARSL 179

Query: 476 AD 471
           AD
Sbjct: 180 AD 181


>SB_30795| Best HMM Match : Epimerase (HMM E-Value=0)
          Length = 869

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 546 IQILDLAVND-DHRNLLERKPPSGGRLVPR-SRALMKLPLGSASI 418
           +++L    +D D  +LL+   P GGR  PR  R+L+  P G  S+
Sbjct: 393 LELLKEKADDLDEESLLDLLAPRGGRDAPRGGRSLLDAPRGGRSL 437


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 406 FSVVL-SSPSRHHIRVINRHAHYFSNSIRFQFICVLYVS 293
           FS++L SSPS++H  ++    H+ ++   F +I ++ +S
Sbjct: 261 FSIILTSSPSKYHRHLVPSPFHHDNSLHHFPYISIINIS 299


>SB_14724| Best HMM Match : UPF0233 (HMM E-Value=5.4)
          Length = 283

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -2

Query: 656 NFVFMLFNFAMQYYTLPTSL*SYRPREQDRPVPSGSTFRSWTLLSTMTIGTFWSGNLRAA 477
           N+     N        P +   Y P+  D  +    TF  W LL+ +TIG F  G  R+ 
Sbjct: 210 NYTLAALNLTFPTTPSPNTTSPYLPKI-DIKLDIQQTF--WVLLAIITIGEFLGGPARSL 266

Query: 476 AD 471
           AD
Sbjct: 267 AD 268


>SB_46614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 207 ICELTAGKKVVLFAVPAPSPRDVLKHTC 290
           IC     +K+   A+ A  PR+V KH C
Sbjct: 178 ICNTKQSRKLTFIALCATHPRNVAKHRC 205


>SB_16475| Best HMM Match : Vicilin_N (HMM E-Value=1.6)
          Length = 153

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 397 QH*RKGAYASRSQRQLHQGSGPGHQSAAARRFPLQKVPMVIVDSKVQDLNVE 552
           Q+  +G    + QRQ+ +   P HQ     +   QKV  +   ++ QD+N+E
Sbjct: 66  QNISEGEEDKKRQRQMRKRQEPPHQQDVKVQEAQQKVDDLTRQNRQQDVNIE 117


>SB_6026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 534 DLAVNDDH-RNLLERKPPSGGRLVPRSRALMK 442
           DL+++D   R LL+ + P G RL  RSR  +K
Sbjct: 34  DLSISDQEMRRLLQERRPRGSRLQERSRHQVK 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,206,039
Number of Sequences: 59808
Number of extensions: 517966
Number of successful extensions: 1369
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)