Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20040
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical ...    32   0.41 
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    30   1.7  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        30   1.7  
AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    29   2.2  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    29   2.2  
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    29   2.9  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    29   2.9  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical ...    28   5.1  

>AC006663-5|AAY43999.1|  490|Caenorhabditis elegans Hypothetical
           protein H24K24.2 protein.
          Length = 490

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = +3

Query: 45  FLTGSSIIRGITAFTNRASRRALHISQLSMA-------PIKVGDQLPAADLF 179
           F+ G  I+R + +F N  SR  LH  +++M        P K+ + LPA   F
Sbjct: 79  FMNGYDIVRFLESFLNEESRNVLHSLEITMESPFAKEWPAKINNMLPALKCF 130


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
 Frame = +2

Query: 239 IICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVR 418
           ++ G G F   C    +       D   +D V      +V +   +  +    N K K+ 
Sbjct: 632 VLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFN-ETVIETSTLKCFAETPNKKNKIT 690

Query: 419 MLADPSGNFI------KALDLGTNLPPLGGFRSKRFRWSSLTARS 535
           M+A+P    +      + + +G N   LG F   ++ W  L ARS
Sbjct: 691 MMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARS 735


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
 Frame = +2

Query: 239 IICGAGAFTPGCSKTHLPGYVQNADKLKSDGVAEIVCVSVNDPYVMAAWGAQHNTKGKVR 418
           ++ G G F   C    +       D   +D V      +V +   +  +    N K K+ 
Sbjct: 507 VLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFN-ETVIETSTLKCFAETPNKKNKIT 565

Query: 419 MLADPSGNFI------KALDLGTNLPPLGGFRSKRFRWSSLTARS 535
           M+A+P    +      + + +G N   LG F   ++ W  L ARS
Sbjct: 566 MMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARS 610


>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1237

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44   VSHRVFDYPWHYRIHQSSVTPSTS-HFTIKHGTN*GRGSAA 163
            ++HR    P+ Y  HQ   TPS   H  +++GT+ G    A
Sbjct: 1139 ITHRQSPQPYPYYHHQQPRTPSPQPHIVVENGTSSGNNGQA 1179


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform b protein.
          Length = 1234

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44   VSHRVFDYPWHYRIHQSSVTPSTS-HFTIKHGTN*GRGSAA 163
            ++HR    P+ Y  HQ   TPS   H  +++GT+ G    A
Sbjct: 1139 ITHRQSPQPYPYYHHQQPRTPSPQPHIVVENGTSSGNNGQA 1179


>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
           protein F01G4.3 protein.
          Length = 1266

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 292 RQVCFRTSRGEGA-GTANNTTFFPAVNSQIFTLLAGESSNKSAAGS*SPTL 143
           +Q    T+ G    G+  N  F P    ++  LLAGE++ KS +G  S  L
Sbjct: 95  KQRSLHTTAGNSIKGSPGNVPFLPGFLEELDDLLAGETTAKSTSGEESKFL 145


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 372  TYGSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPAPQIIQPSFPPSTHKYSPY 196
            T+G+L     +   PS F++      P      HPG+  P   I Q    P  H  SP+
Sbjct: 1178 TFGTLAQK-VVDKRPSQFAI------PSTSTAAHPGLTTPMASIFQSPTMPPPHTPSPF 1229


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 372  TYGSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPAPQIIQPSFPPSTHKYSPY 196
            T+G+L     +   PS F++      P      HPG+  P   I Q    P  H  SP+
Sbjct: 1178 TFGTLAQK-VVDKRPSQFAI------PSTSTAAHPGLTTPMASIFQSPTMPPPHTPSPF 1229


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -1

Query: 372  TYGSLTDTHTISATPSDFSLSAFCTYPGKCVLEHPGVKAPAPQIIQPSFPPSTHKYSPY 196
            T+G+L     +   PS F++      P      HPG+  P   I Q    P  H  SP+
Sbjct: 1178 TFGTLAQK-VVDKRPSQFAI------PSTSTAAHPGLTTPMASIFQSPTMPPPHTPSPF 1229


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 345 CACLLMTRM*WRLGELSTTLKERCVC*PIPAATSSRLWTWAPICRRSEVSAPKGSDGH 518
           C   L++   W  G L +TL        I   T  R+W       R   +AP+GS  H
Sbjct: 354 CISPLLSVAAWHFGVLFSTLATPIAVILISRNTRDRMWLMYTCSGRKNKNAPQGSYAH 411


>AF003740-5|AAL08031.1|  195|Caenorhabditis elegans Hypothetical
           protein C41D11.9 protein.
          Length = 195

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 372 TYGSLTDTHTISATPSDFSLSAFCTYPGKC 283
           T GS++ T  + +   D S    CT+PG C
Sbjct: 17  TIGSISGTKDVKSKNCDGSAGLTCTFPGDC 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,180
Number of Sequences: 27780
Number of extensions: 379819
Number of successful extensions: 976
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)