Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20040
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   2.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   2.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   2.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.0  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 1   RHEVTTIVKTSTF*CFSQGLRLSVALPHSPI 93
           RH + T+ ++         +++  ALPH PI
Sbjct: 338 RHNIRTVAQSDETLQMIASMKIKEALPHVPI 368


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 1   RHEVTTIVKTSTF*CFSQGLRLSVALPHSPI 93
           RH + T+ ++         +++  ALPH PI
Sbjct: 338 RHNIRTVAQSDETLQMIASMKIKEALPHVPI 368


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 1   RHEVTTIVKTSTF*CFSQGLRLSVALPHSPI 93
           RH + T+ ++         +++  ALPH PI
Sbjct: 338 RHNIRTVAQSDETLQMIASMKIKEALPHVPI 368


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 QAAITYGSLTDTHTISATPSDFSLSAF 304
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 QAAITYGSLTDTHTISATPSDFSLSAF 304
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 QAAITYGSLTDTHTISATPSDFSLSAF 304
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 384 QAAITYGSLTDTHTISATPSDFSLSAF 304
           Q AITY    D  T+  +PS  SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = -1

Query: 291 GKCVLEHPGVKAPAPQIIQPSFPPSTHKYSPY 196
           G+     PGV       + PS+ P  H  S Y
Sbjct: 295 GRSACHSPGVYPSTAGFLPPSYHPHQHHPSQY 326


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
 Frame = -1

Query: 438 PLGSASIRTFPLVLC*APQAAITYGSLTDTHTI--SATPSDFSLSAFCTYPGKCVLEHPG 265
           P+GS    +FP +    P A  +  S +   T+    +P   S   +  Y    +   P 
Sbjct: 385 PIGSGG--SFPSLY---PMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPS 439

Query: 264 VKAPAPQ---IIQPSFPPSTHKYSPY*RENLRINQQQ 163
            + P+     + QPS    T +  PY  + L+I  Q+
Sbjct: 440 PQYPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQE 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,396
Number of Sequences: 438
Number of extensions: 4054
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)