Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20039
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   2.2  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   6.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.8  

>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 449 EHSRFSRTKNNFFFIAYVDGRAHSLPGVKWLLEPMDIHNVNA 324
           +H  +  T+ +  F+  +DG ++S   V WL E +   N  A
Sbjct: 129 QHQAYKWTRTSRTFLCGMDGNSYSEVAVDWLFETLLADNDEA 170


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
 Frame = +1

Query: 466 YFAVPIYNEYAR----HRGIRKVTHYCCMVSVERQRTTNAFRECXKNK*KSK 609
           Y+A  I N Y R    H GIR+  +  C    E  R     R C + K  SK
Sbjct: 458 YWARAIMNNYCRKDESHGGIRRCANLLCNKWEEHSRQFAKCRRCRRTKYCSK 509


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 449 EHSRFSRTKNNFFFIAYVDGRAHSLPGVKWLLEPMD 342
           EH RF R+ ++ F+ A+VD    +L G + ++E +D
Sbjct: 249 EHPRFKRSGDHLFYEAHVD-LLTALAGGQIVVEHLD 283


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 391  DELTAYLVLSGYWSPWTS 338
            D+ + Y +LS +W+ W S
Sbjct: 1548 DKTSVYRILSAFWNEWNS 1565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,538
Number of Sequences: 5004
Number of extensions: 57319
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)