Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20039
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10)            29   4.0  
SB_8382| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  

>SB_50624| Best HMM Match : F5_F8_type_C (HMM E-Value=6e-10)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 436 NLECSSVKSIYFAVPIYNEYARHRGIRKVTHYCCMVSV 549
           N    SV  I    PIY +Y R R ++  TH C  V +
Sbjct: 173 NTASDSVADIILTSPIYAKYIRLRPVQWHTHVCMRVEL 210


>SB_8382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 3   FILLNLECSSVKSIYSAAPIYNEYVRHRVCTKSNSLLLHGFGREATNDKRISR 161
           F LL++    V + Y     YNE + H +C + N+LL+      +TN   +++
Sbjct: 9   FTLLSVFTLCVSASYCC---YNETIFHEICCQQNALLIDNCCDNSTNSACLNK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,122,524
Number of Sequences: 59808
Number of extensions: 457122
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)