Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20039
         (618 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M79462-1|AAA60388.1|  860|Homo sapiens PML protein.                    30   7.5  
BC139795-1|AAI39796.1|  540|Homo sapiens PML protein protein.          30   7.5  
AF230401-1|AAG50180.1|  882|Homo sapiens tripartite motif protei...    30   7.5  
AB209411-1|BAD92648.1|  862|Homo sapiens promyelocytic leukemia ...    30   7.5  
BC073870-1|AAH73870.1|  119|Homo sapiens FLJ32065 protein protein.     29   9.9  
BC052251-1|AAH52251.1| 1499|Homo sapiens ATPase, Class V, type 1...    29   9.9  
AY029504-1|AAK33100.1| 1499|Homo sapiens aminophospholipid-trans...    29   9.9  
AB051358-1|BAB47392.1| 1499|Homo sapiens putative aminophospholi...    29   9.9  

>M79462-1|AAA60388.1|  860|Homo sapiens PML protein.
          Length = 860

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -2

Query: 293 LSIVTTAAPPFEPNALLLHGRNRQGGGTYSRGLTRGPTASEVKHSRNAFVVRCLSTETMQ 114
           LS+ TT  PP +P        N Q  GTY  GL  GP  +  +        R L+    Q
Sbjct: 805 LSLQTTTLPPAQP------AFNLQALGTYFEGLLEGPALARAEGVSTPLAGRGLAERASQ 858

Query: 113 Q 111
           Q
Sbjct: 859 Q 859


>BC139795-1|AAI39796.1|  540|Homo sapiens PML protein protein.
          Length = 540

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -2

Query: 293 LSIVTTAAPPFEPNALLLHGRNRQGGGTYSRGLTRGPTASEVKHSRNAFVVRCLSTETMQ 114
           LS+ TT  PP +P        N Q  GTY  GL  GP  +  +        R L+    Q
Sbjct: 485 LSLQTTTLPPAQP------AFNLQALGTYFEGLLEGPALARAEGVSTPLAGRGLAERASQ 538

Query: 113 Q 111
           Q
Sbjct: 539 Q 539


>AF230401-1|AAG50180.1|  882|Homo sapiens tripartite motif protein
           TRIM19 alpha protein.
          Length = 882

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -2

Query: 293 LSIVTTAAPPFEPNALLLHGRNRQGGGTYSRGLTRGPTASEVKHSRNAFVVRCLSTETMQ 114
           LS+ TT  PP +P        N Q  GTY  GL  GP  +  +        R L+    Q
Sbjct: 827 LSLQTTTLPPAQP------AFNLQALGTYFEGLLEGPALARAEGVSTPLAGRGLAERASQ 880

Query: 113 Q 111
           Q
Sbjct: 881 Q 881


>AB209411-1|BAD92648.1|  862|Homo sapiens promyelocytic leukemia
           protein isoform 1 variant protein.
          Length = 862

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 20/61 (32%), Positives = 25/61 (40%)
 Frame = -2

Query: 293 LSIVTTAAPPFEPNALLLHGRNRQGGGTYSRGLTRGPTASEVKHSRNAFVVRCLSTETMQ 114
           LS+ TT  PP +P        N Q  GTY  GL  GP  +  +        R L+    Q
Sbjct: 807 LSLQTTTLPPAQP------AFNLQALGTYFEGLLEGPALARAEGVSTPLAGRGLAERASQ 860

Query: 113 Q 111
           Q
Sbjct: 861 Q 861


>BC073870-1|AAH73870.1|  119|Homo sapiens FLJ32065 protein protein.
          Length = 119

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 359 LLEPMDIHNVNAPPTLR--YKF*DLSIVTTAAPPFEPNALLLHG 234
           L  P  +H + +PPTLR        S++ T   P + NA+ ++G
Sbjct: 47  LFGPCILHQIGSPPTLRPPKTLNSSSVILTERYPLQTNAVFIYG 90


>BC052251-1|AAH52251.1| 1499|Homo sapiens ATPase, Class V, type 10A
           protein.
          Length = 1499

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 481 IYNEYARHRGIRKVTHYCCMV-SVERQRTTNAF 576
           ++ +Y+RHR   K+ H  C+V S E ++  N F
Sbjct: 127 LWEDYSRHRSDHKINHLGCLVFSREEKKYVNRF 159


>AY029504-1|AAK33100.1| 1499|Homo sapiens
           aminophospholipid-transporting ATPase protein.
          Length = 1499

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 481 IYNEYARHRGIRKVTHYCCMV-SVERQRTTNAF 576
           ++ +Y+RHR   K+ H  C+V S E ++  N F
Sbjct: 127 LWEDYSRHRSDHKINHLGCLVFSREEKKYVNRF 159


>AB051358-1|BAB47392.1| 1499|Homo sapiens putative aminophospholipid
           translocase protein.
          Length = 1499

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 481 IYNEYARHRGIRKVTHYCCMV-SVERQRTTNAF 576
           ++ +Y+RHR   K+ H  C+V S E ++  N F
Sbjct: 127 LWEDYSRHRSDHKINHLGCLVFSREEKKYVNRF 159


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,364,899
Number of Sequences: 237096
Number of extensions: 2164370
Number of successful extensions: 3730
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3730
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)