Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20039
         (618 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071150-1|AAL48772.1|  369|Drosophila melanogaster RE18169p pro...    30   2.2  
AE014298-3181|AAF50949.1|  369|Drosophila melanogaster CG12576-P...    30   2.2  

>AY071150-1|AAL48772.1|  369|Drosophila melanogaster RE18169p
           protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 421 IIFFLLLMWMDEL-TAYLVLSGYWSPWTSTT*MRHPP*DISSKISV*LQRLPHPSNRTHY 245
           ++  +L+ W   L   +L L GYW  WT  +    P  ++  KI+  LQR+    +R+  
Sbjct: 20  VVTVVLMSWARPLGVLFLGLLGYWIYWTRCSFRVVPTDELRGKINTWLQRIDDWRHRSPS 79

Query: 244 CF 239
            F
Sbjct: 80  MF 81


>AE014298-3181|AAF50949.1|  369|Drosophila melanogaster CG12576-PA,
           isoform A protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 421 IIFFLLLMWMDEL-TAYLVLSGYWSPWTSTT*MRHPP*DISSKISV*LQRLPHPSNRTHY 245
           ++  +L+ W   L   +L L GYW  WT  +    P  ++  KI+  LQR+    +R+  
Sbjct: 20  VVTVVLMSWARPLGVLFLGLLGYWIYWTRCSFRVVPTDELRGKINTWLQRIDDWRHRSPS 79

Query: 244 CF 239
            F
Sbjct: 80  MF 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,375,996
Number of Sequences: 53049
Number of extensions: 671930
Number of successful extensions: 1436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)