Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20038
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 35 0.049
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016) 29 2.4
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77) 29 3.2
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 5.6
SB_9159| Best HMM Match : Adhesin_P1 (HMM E-Value=8.1) 27 9.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 257 FYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 379
F +LRGL GD N E YD+F+ P G+ + +F A+RL
Sbjct: 20 FLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 257 FYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 379
F +LRGL GD N E YD+F+ P G+ + +F A+RL
Sbjct: 1430 FLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470
>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 260 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 379
Y G GL G+ N P DDF + NG+ S+ EFG ++ L
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215
>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 278 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 379
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 63 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 35.1 bits (77), Expect = 0.049
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 278 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 379
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 1844
>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
Length = 237
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 260 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 370
+ G GL GD +N P +DF P G+ T +F +
Sbjct: 197 FYGNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233
>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 252 NASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVH 395
+A +W + + + T + L+ T Y+M SA AS +RT + +H
Sbjct: 385 HAPSWTSTTLLNLTHSRVLSRTVEYVMHSSACHAASCTSRTTYVNVMH 432
>SB_7955| Best HMM Match : SH3_1 (HMM E-Value=0.77)
Length = 1002
Score = 29.1 bits (62), Expect = 3.2
Identities = 39/121 (32%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Frame = +3
Query: 57 GR*ERSIIELKENGQAILNGASKGF-----PI-IEKDVFAFRQPSNRIGVGSLYGLMVFC 218
G+ ER + EL ENG+ L S G P+ K FA PS R V L L
Sbjct: 642 GKRER-VSELNENGEPGLRRNSAGKKGKAPPVPAGKKPFASESPSKRKEV--LENLKARM 698
Query: 219 TSK-LEVCYIEANASTWVNFAVFSETVT----TSLTMTSGYLMERSALRKASSVTRTVWP 383
S L + +A +S N FS T T + +T + + SSVTR WP
Sbjct: 699 NSNGLNILPDQATSSVTDNIQEFSSQNTDGPLTDVPLTDEAITPLNRTLSQSSVTRPEWP 758
Query: 384 A 386
A
Sbjct: 759 A 759
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = +1
Query: 367 RVPSGP---QLSTGASARTLPSPAARCIPPPRLR---TGLRGNIAAQDPVIVHDMSPFRQ 528
R+P+ P + G S + PSP R P P L+ T +G + Q R+
Sbjct: 168 RIPTPPLPQNMGLGLSRTSTPSPELRVSPSPTLKTESTQTKGTTSQQSTQTAKKKPSSRK 227
Query: 529 ACIHAVTGTDAAKDXHEACDLG 594
+ V D K E D G
Sbjct: 228 GSVDKVPEKDGKKPEAETKDEG 249
>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 8 SRC*SNFKTENPRLLFWKIRA-EYHR 82
S C N+ ENP L+ W++ A +YHR
Sbjct: 919 SYCIRNYIHENPDLILWELAANDYHR 944
>SB_39328| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1049
Score = 28.3 bits (60), Expect = 5.6
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +3
Query: 126 GFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANASTWVNFAVFSETVTTS 305
G I+E+ VF R P + G+G Y S +E + N STWV F + T
Sbjct: 840 GSTIMEEKVFDLRNPMMQSGIGKRY-------SNVEQGF-RMNGSTWVKFG--TPTFVWQ 889
Query: 306 LTMTSGY 326
L TS +
Sbjct: 890 LAKTSEF 896
>SB_9159| Best HMM Match : Adhesin_P1 (HMM E-Value=8.1)
Length = 267
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 259 EALASM*HTSSLDVQKTMRPYNEPTP 182
E +ASM HTSS + +MR Y + TP
Sbjct: 1 ELVASMDHTSSRLSESSMRSYKKTTP 26
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +1
Query: 370 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVIVHDMSPFRQACIHAVT 549
+P+ P+ + A + P+P + C PP T N ++ P ++ SP + +
Sbjct: 952 LPTNPKSPSEAPSLNNPNPRSSCTTPPSSDT---TNSSSAGPSATNNASPSSSPYVASAP 1008
Query: 550 GTDAA 564
G D++
Sbjct: 1009 GKDSS 1013
>SB_40993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +3
Query: 291 TVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPA 458
TV TS SG + +R LR ++ T V + C P SCT SPP A
Sbjct: 8 TVVTSSFQESGGIAQRYGLRFSNKRTG-VRIQRLPTCTPVTLPFISCTAVHSPPNA 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,983,735
Number of Sequences: 59808
Number of extensions: 433438
Number of successful extensions: 1544
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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