Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20038
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    28   6.5  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    28   6.5  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    27   8.6  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   8.6  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   8.6  

>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 370 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 501
           VP+ P +++ + A   PSP A   PPPRL           +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 246 EANASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRT-VWPAAVHRCKRPNTPI 422
           E + S+W  F    E + T+ T       +R+ LRK ++ T T     +    ++P T  
Sbjct: 128 EKDESSWKKFTTTEEPLETTTTKRIITTPKRTTLRKTTTTTTTSTTSTSTTTTEKPTTAT 187

Query: 423 TSCTMHP 443
           T+  + P
Sbjct: 188 TTARVTP 194


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +3

Query: 246 EANASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPIT 425
           EA +S+  N  +   T +T+   +S  L+  S+  + SS TRTV  +        +T I 
Sbjct: 75  EALSSSTTNIPM--TTFSTNEASSSTKLLSTSSTAEISSTTRTVSRSIKPETSTASTTIR 132

Query: 426 SCTMHPSPPPAN 461
             T   +P P+N
Sbjct: 133 PLTTTTTPAPSN 144


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 278  GLLGDGNNEPYDDFRLPNGKI 340
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 496 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 413
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 496 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 413
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 367  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 462
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 367  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 462
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 367  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 462
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,564,400
Number of Sequences: 27780
Number of extensions: 317130
Number of successful extensions: 1198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)