Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20038
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    31   0.65 
At1g09790.1 68414.m01098 phytochelatin synthetase-related contai...    30   1.1  
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ...    29   2.0  
At4g09450.1 68417.m01555 myb family transcription factor contain...    29   2.6  
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   3.5  
At5g16560.1 68418.m01938 myb family transcription factor (KAN1) ...    29   3.5  
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro...    29   3.5  
At1g70280.2 68414.m08086 NHL repeat-containing protein contains ...    29   3.5  
At1g70280.1 68414.m08085 NHL repeat-containing protein contains ...    29   3.5  
At5g19810.1 68418.m02354 proline-rich extensin-like family prote...    28   6.1  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    28   6.1  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    27   8.0  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    27   8.0  
At3g50180.1 68416.m05486 hypothetical protein                          27   8.0  

>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 270 NFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAV--HRCKRPNTPITS 428
           NF V+   +T + T+  G      AL   SSV  TV P  V  HRCKR  T  TS
Sbjct: 36  NFTVWPGILTANRTLLRG---GGFALASGSSVNLTVSPENVKMHRCKRSTTSHTS 87


>At1g09790.1 68414.m01098 phytochelatin synthetase-related contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 454

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 308 YDDFRL-PNGKICTSESEFGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQ 463
           Y  FR  P+ K C S S F   Y+    CP       S H + D  LPP  EQ
Sbjct: 221 YSQFRSSPSPKCCVSLSAF--YYQNIVPCPTCSCGCSSSHCVKDGELPPYLEQ 271


>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 633

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = +2

Query: 380 ARSCPQVQAPEHSHHQLHDASLPPACEQVFGGISPLRTLSLFMTCRLSDKRVFTPSPAQT 559
           A S  ++  P H  H L     PP  E    GI  L  +  F  C + D  V T    + 
Sbjct: 57  AESPLEINHPSHPEHPLRLTERPPRYECDICGIHHLADVPYFYHCSICDFNVDTSCARKP 116

Query: 560 P 562
           P
Sbjct: 117 P 117


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +3

Query: 66  ERSIIELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYI 245
           E   ++L E G++  NG   G P  E++   F +  N+ G G    +  +C        +
Sbjct: 70  EDDYVKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYCVKSRTSTQV 129

Query: 246 EANASTW 266
            ++A  +
Sbjct: 130 ASHAQKY 136


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 408 PNTPITSCTMHPSPPPANRSSGEY 479
           P+TP T+C   PSPP +   S  Y
Sbjct: 58  PSTPTTACPPPPSPPSSGGGSSYY 81


>At5g16560.1 68418.m01938 myb family transcription factor (KAN1)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI1 (KAN1) GI:15723590
          Length = 403

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 338 ICTSESEFGNAYRLARSCPQVQ-APEHSHH 424
           I  S S + NAYR  +S P+++  P H HH
Sbjct: 147 ILNSSSGYNNAYRSLQSSPRLKGVPLHHHH 176


>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
           protein
          Length = 192

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 413 HSHHQLHDASLPPACEQVFGGISPLRTLS 499
           H HH  HDAS+PP+   +    SP  + S
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASAS 163


>At1g70280.2 68414.m08086 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 509

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 302 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 409
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 84  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 119


>At1g70280.1 68414.m08085 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 447

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 302 EPYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAP 409
           EPY    LPNG++   +SE  N Y+++ S      P
Sbjct: 22  EPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRP 57


>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 249

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 384 AAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRSGP 494
           AA ++   P  P     ++P PPP  +++  Y+RS P
Sbjct: 187 AAYYKKTPPPPPYKYGRVYPPPPPPPQAARSYKRSPP 223


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 402 KRPNTPITSCTMHPSPPPANRSS 470
           KR  +PIT    H SPPP  R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 258 STWVNFAVF-SETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCT 434
           S  V+F+ F ++T+T   +   G   ++S ++  S +   +    ++  K+ NTP+  CT
Sbjct: 216 SCCVSFSSFYNDTITPCPSCACGCENKKSCVKADSKI---LTKKGLNTPKKDNTPLLQCT 272

Query: 435 MHPSP 449
            H  P
Sbjct: 273 HHMCP 277


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 396 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRSG 491
           R KRP +P+  C    P PPP +  S    R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367


>At3g50180.1 68416.m05486 hypothetical protein
          Length = 588

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 418 PSPAARCIPPPRLRTGLRGNIAAQDPVIVHDMSPFRQACIHAVTGTDAAK 567
           P    R +PPPR +  LR  +  Q P+++ +  P R   I  +TG D  K
Sbjct: 46  PRLRLRLLPPPRQQL-LR--LRKQQPLVLPEPLPLRPRAIPWLTGHDVKK 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,577
Number of Sequences: 28952
Number of extensions: 300917
Number of successful extensions: 1075
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)